Repetitive DNA elements found in the A. thaliana genome

Entries in this table are organized by Identification #. These entries are also organized by their Classification.

Identification # Repeat sequence name Classification
ATR0001 AL1a 180-bp
ATR0002 AL1b 180-bp
ATR0003 AS1 180-bp
ATR0004 AS2 180-bp
ATR0005 AR11 180-bp
ATR0006 AR12 180-bp
ATR0007 AR13 180-bp
ATR0008 AR14 180-bp
ATR0009 pAtMr1 180-bp
ATR0010 pAtT28 180-bp
ATR0011 pAtT29 180-bp
ATR0012 AR21 500-bp
ATR0013 AR22 500-bp
ATR0014 pAtT20 500-bp
ATR0015 pAtT24 500-bp
ATR0016 pAtT25 500-bp
ATR0017 AR31 160-bp
ATR0018 AR32 160-bp
ATR0019 AR33 160-bp
ATR0020 mil67 centromeric
ATR0021 164A centromeric
ATR0022 163A centromeric
ATR0023 278A centromeric
ATR0024 pAtT27 centromeric on chr. I
ATR0025 5S rDNA ribosomal
ATR0026 10.5 kbp rDNA repeat ribosomal
ATR0027 18S rDNA ribosomal
ATR0028 intergenic spacer between 18S and 5.8S rDNAs ribosomal
ATR0029 5.8S rDNA ribosomal
ATR0030 intergenic spacer between 5.8S and 25S rDNAs ribosomal
ATR0031 25S rDNA ribosomal
ATR0032 intergenic spacer between 25S and 18S rDNAs ribosomal
ATR0033 Athila retroelement centromeric retrotransposon
ATR0034 Athila 180-bp repeat, clone H12 centromeric retrotransposon
ATR0035 Athila 180-bp repeat, clone H2 5'-end centromeric retrotransposon
ATR0036 Athila 180-bp repeat, clone H2 3'-end centromeric retrotransposon
ATR0037 Athila 180-bp repeat, clone H33 centromeric retrotransposon
ATR0038 Ta1 transposon retrotransposon
ATR0039 Tat1a transposon transposon
ATR0040 Tat1b transposon transposon
ATR0041 Tat1c transposon transposon
ATR0042 Tag1 transposon transposon
ATR0043 TSCL retrotransposon retrotransposon
ATR0044 106B LTR
ATR0045 Telomeric repeat unit telomeric
ATR0046 74A microsatellite
ATR0047 191A unclassified
ATR0048 182A unclassified
ATR0049 15C8LE unclassified
ATR0050 11B7RE paracentromeric
ATR0051 arabms1 minisatellite minisatellite
ATR0052 T3F12 putative LINE LINE
ATR0053 T3F12 repeat from 23801 to 26400 unclassified
ATR0054 T3F12 repeat from 62182 to 62530 unclassified
ATR0055 T17A5 repeat from 54001 to 54670 unclassified
ATR0056 T17A5 solo LTR solo LTR
ATR0057 T32N15 MITES-like repeat 1 MITES
ATR0058 T32N15 minisatellite minisatellite
ATR0059 T32N15 del-like retrotransposon retrotransposon
ATR0060 T32N15 repeat from 12951 to 13621 unclassified
ATR0061 T32N15 MITES-like repeat 2 MITES
ATR0062 T18A10 repeat from 9736 to 10416 unclassified
ATR0063 Chromomeric repeat on T5H22 chromomeric
ATR0064 limpet transposon transposon
ATR0065 limpet terminal inverted repeat A  
ATR0066 limpet terminal inverted repeat B  
ATR0067    
ATR0068    
ATR0069    
ATR0070    
ATR0071    
ATR0072    
ATR0073    
ATR0074    
ATR0075 F2N1 repeat 1 from 1222 to 1784  
ATR0076 F2N1 repeat 2 from 47844 to 47907  
ATR0077 F2N1 repeat 3 from 98804 to 99481  
ATR0078 F2N1 repeat 4 from 109233 to 109873  
ATR0079 T7B11 repeat 1 from 35554 to 36658  
ATR0080 T7B11 repeat 2 from 62229 to 62597  
ATR0081 T7B11 minisatellite 1  
ATR0082 T7B11 repeat 3 from 81659 to 82015  
ATR0083 T7B11 repeat 4 from 92302 to 92489  
ATR0084 T7B11 repeat 5 from 102144 to 105991 MuDR fragment
ATR0085 T7B11 minisatellite 2  
ATR0086 T4B21 repeat 1 from 13386 to 14621  
ATR0087 T4B21 repeat 2 from 36983 to 37497  
ATR0088 T1J1 minisatellite minisatellite
ATR0089 T1J1 repeat 1 from 20676 to 20799  
ATR0090 F1K3 repeat 1 from 2850 to 6557  
     

This database was last updated on 18 Apr 1999