AtRepBase

AtRepBase is a database of genomic sequences repeated in the Arabidopsis genome. This database and accompanying BLAST servers have been established to allow researchers to easily identify genomic repeats. This database is mirrored at AtDB's BLAST server.

Download AtRepBase sequences via ftp

Reference and acknowledgements


View sequence entries in AtRepBase organized by Identification # or by Classification

Go to Transposon Annotation Page


Choose BLAST program  

Enter sequence in FASTA or plain-text format

     


AtRepBase was established with the generous assistance of Neilay Dedhia and Greg Copenhaver and is curated by Larry Parnell. With the assistance of Xiaoying Lin and Maria-Ines Benito at TIGR, I have been able to update the database on 18 Apr 99. Please direct email to parnell@cshl.org. It is requested that users of this database reference this url.