Gene F5I10.2
Identification transmembrane protein TMP-C
Position 24857 - 26245, from the initial methionine to the termination codon
Strand +
EST match several, possibly 36 different ESTs or more
Database match transmembrane protein TMP-C, D26609

 

Note:  A TBLASTN search at AtDB lists 100 ESTs with a smallest sum probability of e-44 or less. Because TMP-C is a member of a highly conserved protein family, it is difficult to assess exactly how many ESTs are represented by this gene. Nonetheless, it is clear that the various EST datasets are redundant with regard to this gene.

 

CDS:  The table below lists the coordinates of the exons for F5I10.2

Exon

Range

1 24857 - 25187
2 25491 - 25786
3 25915 - 26055
4 26150 - 26245

 

Protein sequence of F5I10.2

MEGKEEDVRVGANKFPERQPIGTSAQSTDKDYKEPPPAPLFEPGELSSWSFYRAGIAEFI
ATFLFLYITVLTVMGVKRAPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTF
GLFLARKLSLTRAVFYMIMQCLGAICGAGVVKGFQPTPYQTLGGGANTVAHGYTKGSGLG
AEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARS
LGAAIIYNKDHSWDDHWIFWVGPFIGAALAALYHQIVIRAIPFKSKS*

 

written 7 Jan 98
Larry Parnell