Gene F5I10.22
Putative Identification hypothetical protein
Position 41940 - 44429, from the initial methionine to the termination codon
Strand -
EST match F14071; F14072 and Z26823 are very similar
Database match hypothetical protein from Sorghum bicolor

 

CDS:  The table below lists the coordinates of the exons for F5I10.22

Exon

Range

1 43479 - 44429
2 43261 - 43422
3 43057 - 43146
4 42369 - 42923
5 41940 - 42170

 

Protein sequence of F5I10.22

MDISDEESEISESEIEEYSKTPYHLLRSETYYKVKVNGRLRCPFCVGKKKQDYKYKELHA
HATGVSKGSATRSALQKSNHLALAKFLENDLAGYAEPLPRPPVVPPLLDETEPNPHNVYV
WPWMGIVVNPLKETDDKELLLDSVYWLQTLSKFKPVEVNAFWVEQDSIVGVIAKFDSDWS
GFAAATELEKEFETQGSCKKEWTERSGDSESKAYGWCARADDFQSQGPIGEYLSKEGTLR
TVSDILQNNVQDRNTLLDVLSNMIDMTNEDLNKAQHSYNRTAMSLQRVLDEKKNLHQAFA
EGIYSHTDMFPTHIAFRMSLRHIQRILYDKEKLRNELDRKMRDLESRAKQLEKHEALTEL
ERQKLDEDKRKSDAMNKSLQLASREQKKADESVLRLVEEHQLDTKQTLEMEIQELKGKLQ
VMKHLGDDDDEAVQTKMKEMNDELDDKKAELEDLESMNSVLMTKERQSNDEIQAARQKMI
AVQISNALVFLGTDRVAFLPLSSILEYSKDCSLIQGLTGLLGAESDIGVKRMGELDEKPF
LDVCKLRYSANEARVEAATLCSTWKENLKNPSWQPFKREGTGDGAEEVVDEDDEQLKKLK
REWGKEVHNAVKAALVEMNEYNASGRYPTSELWNFKEGRKATLKEVITFISTDIKNLKRK
RT

 

Comparison to hypothetical protein from Sorghum bicolor. Presented is a portion of the output from BLASTP analysis, showing the match to S. bicolor hypothetical protein. F5I10.22 is also similar to Arabidopsis F2N1.10 and rice open reading frames between putative ADP-glucose pyrophosphorylase subunit SH2 and putative NADPH-dependent reductase A1.

 gi|2735841 (AF010283) No definition line found [Sorghum bicolor]
           Length = 895

 Score =  406 bits (1033), Expect = e-112
 Identities = 237/630 (37%), Positives = 357/630 (56%), Gaps = 76/630 (12%)

Query: 33  KVKVNGR-LRCPFCVGKKKQDYKYKELHAHATGVSKGSATRSALQKSNHLALAKFLENDL 91
           KVK NG    C FC  KKK +Y    L  HA+GVS  +  R A +K+ H AL K+L+NDL
Sbjct: 6   KVKNNGENYSCLFCSSKKKNNYSKSSLVQHASGVS-AAPNRKAKEKAAHRALFKYLKNDL 64

Query: 92  AGYAEPLPRPPVVPPLLDETEPNPHNVYVWPWMGIVVNPLKETDDKELLLDSVYWL-QTL 150
           A  +EP    P+V P+  +   N    +VWPWMGI+VN   E  D   + +S   L + L
Sbjct: 65  AKSSEP---QPLVIPVEPQPLQNRDEKFVWPWMGILVNVPTEWKDGRQIGESGNRLKEQL 121

Query: 151 SKFKPVEVNAFWVEQDSIVGVIAKFDSDWSGFAAATELEKEFETQGSCKKEWTERSGDSE 210
           S F P++V   W  +      I +F  DW+GF  A   E  F   G  KK+WT +     
Sbjct: 122 SHFCPLKVIPLWTFRGHTGNAIVEFGKDWNGFRNARTFESHFAAGGFGKKDWTGKKNQG- 180

Query: 211 SKAYGWCARADDFQSQGPIGEYLSKEGTLRTVSDILQNNVQDRNTLLDVLSNMIDMTNED 270
           S+ YGW ARA+D+ S G I +YL K G L++V+D+ +   +  + L+  L+N I++ N  
Sbjct: 181 SELYGWLARAEDYNSPGIIADYLRKNGDLKSVNDLAKEGARKTDRLVANLANQIEVKNRY 240

Query: 271 LNKAQHSYNRTAMSLQRVLDEKKNLHQAFAEGIYSHTDMFPTHIAFRMSLRHIQRILYDK 330
           L + +  Y+ T  SL++++ +++ L Q++ E I             +++ RH Q+++ + 
Sbjct: 241 LQELESKYSETTASLEKMMGQREQLLQSYNEEISKMQ---------QLARRHSQKVIDEN 291

Query: 331 EKLRNELDRKMRDLESRAKQLEKHEALTELERQKLDEDKRKSDAMNKSLQLASREQKKAD 390
           +KLR+EL+ KM DL+ R+KQL++  A ++ +R+ L+++K+K+   +  L+LA+ EQ+KAD
Sbjct: 292 QKLRSELEAKMNDLDVRSKQLDELAAKSDYDRRNLEQEKQKNAIKSSHLKLATLEQQKAD 351

Query: 391 ESVLRLVEEH-----------QLDTKQTLEMEIQELKGKLQVMKHLGDDDDEAVQTKMKE 439
           E+VL+L E+H           QLD KQ LE+EIQ+LKGKL+VM+H+  D+D A + K+ E
Sbjct: 352 ENVLKLREKHAALKKILMLEQQLDAKQKLELEIQQLKGKLKVMEHMPGDEDSASKNKINE 411

Query: 440 MNDELDDKKAELEDLESMNSVLMTKERQSNDEIQAARQKMIAVQISNALVFLGTDRVAFL 499
           +++ L +K  EL+ +ES+N  L+ KE +SN E+Q AR+++  V                 
Sbjct: 412 LSEALQEKIDELDGMESLNQTLVIKESKSNIELQEARKELENV----------------- 454

Query: 500 PLSSILEYSKDCSLIQGLTGLLGAESDIGVKRMGELDEKPFLDVCKLRYSANEARVEAAT 559
                      C            ++ IG+KRMGELD K F   C+ +    +A V AA 
Sbjct: 455 -----------CG-----------QAHIGIKRMGELDLKAFSKACQ-KERTEDAEVTAAF 491

Query: 560 LCSTWKENLKNPSWQPFKREGTGDGAEEVVDEDDEQLKKLKREWGKEVHNAVKAALVEMN 619
           LCS W+  +KNP W PF+ E         + EDD +L+ LK E G+E++  V  AL+E+N
Sbjct: 492 LCSKWEAEIKNPDWHPFRVE---------IIEDDAKLRALKEEHGEEIYALVTKALLEIN 542

Query: 620 EYNASGRYPTSELWNFKEGRKATLKEVITF 649
           EY + G YP  ELWNFKE RK TLKE + F
Sbjct: 543 EYKSKGSYPVGELWNFKENRKVTLKEAVQF 572

 


written 8 Jan 98
Larry Parnell