Gene F6P23.10.1
Putative Identification hypothetical protein
Position 53914 to 54705
Strand -
EST match none
Database match A. thaliana hypothetical proteins F6P23.10 and T17A5.2.2

 

CDS:  The table below lists the coordinates of the single exon of F6P23.10.1 and which gene prediction programs selected the 3' and 5' termini (GS = GenScan, Gr = GRAIL). Genes F6P23.10 and F6P23.10.1 are 87.9% identical at the nucleotide level.

Exon Range 3' 5'
1 54705 to 53914 GS,Gr GS,Gr

Complete CDS of F6P23.10.1

ATGGCAGTCTCCTTCCACGTTCGATCTAACAGCTTCCCCTCAAGATCTCACCCACAAGCT
GCTCATGTGGATGAGCAGTTGGCCCGTTTGAGATCTTCCGAGCAAGCCTCATCATCTTCC
AGCTCTTCTATCTGCCAAAGGCTTGACAACCTTCAAGAACTACATGAGTCTCTTGACAAG
CTTATCAGCCGACCTGTCACACAACAGGCTCTTTCTCAAGAGCATAACAAGAAAGCCGTT
GAACAGCTTCTTGATGGATCCCTCAGGATCTTGGATTTGTGCAACATTTCCAAGGATGCT
TTGTCAGAGATGAAAGAGGGTCTCATGGAGATCCAATCAATTCTAAGAAGAAAGCGTGGT
GATCTATCGGAAGAAGTCAAGAAATACTTAACCTCAAGAAAATCTCTTAAGAAGTCATTC
CAGAAAGTACAAAAGTCTTTGAAGGTTACACAAGCTGAAGACAACAACGATGACACTTTG
GCTGTCTTTGGAGAAGCAGAAGCTATTACACTTTCTCTGTTTGATTCTCTCCTTAGCTAC
ATGTCTGGATCAAAGACTTGTAGTAAATGGTCAGTCGTCTCAAAGCTAATGAACAAGAAG
AAAGTTACATGTGAAGCGCAAGAAAACGAATTCACGAAGGTTGATTCCGAATTTCAATCC
GAAAAGACCTTGAAGATGGATGATGTTCAGAACCTAGAGTCATGCATTCAAGATCTTGAA
GATGGACTTGAATCACTTTCAAAGTCATTGATTAAATACAGAGTCTCATTTCTTAACATC
TTAGGCCACTAA

 

Protein translation:

MAVSFHVRSNSFPSRSHPQAAHVDEQLARLRSSEQASSSSSSSICQRLDNLQELHESLDK
LISRPVTQQALSQEHNKKAVEQLLDGSLRILDLCNISKDALSEMKEGLMEIQSILRRKRG
DLSEEVKKYLTSRKSLKKSFQKVQKSLKVTQAEDNNDDTLAVFGEAEAITLSLFDSLLSY
MSGSKTCSKWSVVSKLMNKKKVTCEAQENEFTKVDSEFQSEKTLKMDDVQNLESCIQDLE
DGLESLSKSLIKYRVSFLNILGH*

 

Alignment of F6P23.10, F6P23.10.1, and T17A5.2.2. These three proteins all have no other matches to the database and all are encoded by single-exon genes.

            1                                                         60
  F6P23.10  MAVSFHVRSHSYPSIPHPQAAHVDEQLARLRSSEETST.SSSSSICQRLDNLQELHESLD 
F6P23.10.1  MAVSFHVRSNSFPSRSHPQAAHVDEQLARLRSSEQASS.SSSSSICQRLDNLQELHESLD 
 T17A5.2.2  MMIKNHVRSISLQSRSHPSTAAIEESLDKFLITMNTSTMASSESVHSGLSGLEDLYDCSE 

            61                                                       120
  F6P23.10  KLIRLPVTQQALGQEKNKKD.........VEQLLDGSLKILDVCNISKDALSQMKEGLME 
F6P23.10.1  KLISRPVTQQALSQEHNKKA.........VEQLLDGSLRILDLCNISKDALSEMKEGLME 
 T17A5.2.2  DLLKMGSTQRVLSFSDEKKKKKRKVKGEFMEEMLDGSLRLMDICNVSRDLMVETHEHVLG 

            121                                                      180
  F6P23.10  IQSILRRKRG.DLSGEVKKYLASRKSFKK...TFQKVQKSLKAAQAEDNKDKSLAVFGEA 
F6P23.10.1  IQSILRRKRG.DLSEEVKKYLTSRKSLKK...SFQKVQKSLKVTQAEDNNDDTLAVFGEA 
 T17A5.2.2  LQSCVRRRKDVDVSGYVGFRKNMRKEVKKLLGSLKNINVGLVMRDHGYDQDGDIHFLAVI 

            181                                                      240
  F6P23.10  EA......VTIAMFDSLFSYMSGSKTCS..KWSVVSKLMNKKKITCEAQ.ENEFTKVDSE 
F6P23.10.1  EA......ITLSLFDSLLSYMSGSKTCS..KWSVVSKLMNKKKVTCEAQ.ENEFTKVDSE 
 T17A5.2.2  HAMRRVVYMTVSVLKSFFEFLSGRQNGNDVRSKLALVLMNKKFHDHDKMVKNELENVDSA 

            241                                            290
  F6P23.10  FQSEKTLK...MEDVQILESCIQDFEDGLESLSKSLIKYRVSILNSFGH*
F6P23.10.1  FQSEKTLK...MDDVQNLESCIQDLEDGLESLSKSLIKYRVSFLNILGH*
 T17A5.2.2  ICGDSISHDDLHEKLEEVEVWIGKFEKSLEGLFRGLIKTRASLLNIISQ*

 

written 18 Oct 97
Larry Parnell