Gene F6P23.10
Putative Identification hypothetical protein
Position 51451 to 52242
Strand -
EST match none
Database match A. thaliana hypothetical proteins F6P23.10.1 and T17A5.11.1

 

CDS:  The table below lists the coordinates of the single exon of F6P23.10 and which gene prediction programs selected the 3' and 5' termini (GS = GenScan, Gr = GRAIL).

Exon Range 3' 5'
1 51451 to 52242 GS,Gr GS,Gr

Complete CDS of F6P23.10

ATGGCTGTCTCCTTCCACGTTCGATCTCACAGTTACCCCTCGATACCTCACCCACAAGCC
GCTCATGTTGATGAGCAGTTGGCCAGATTAAGATCTTCTGAGGAAACCTCAACATCTTCA
AGCTCTTCTATCTGTCAAAGACTTGACAACCTTCAAGAACTACATGAGTCTCTTGACAAG
CTTATTCGCCTACCCGTTACACAACAGGCTCTCGGTCAAGAGAAGAACAAGAAAGACGTT
GAGCAACTTCTTGATGGATCTCTCAAGATATTGGATGTGTGCAACATATCCAAGGATGCT
TTGTCGCAGATGAAAGAAGGTCTCATGGAGATCCAATCTATTCTAAGAAGAAAGCGCGGA
GATCTATCAGGAGAGGTGAAGAAATACTTAGCCTCAAGAAAGTCCTTCAAGAAGACATTC
CAGAAAGTACAAAAGTCCCTCAAGGCTGCACAAGCAGAAGACAACAAGGACAAATCTTTG
GCTGTGTTTGGAGAAGCAGAAGCTGTTACAATTGCTATGTTTGATTCTCTCTTTAGCTAC
ATGTCTGGATCAAAGACTTGTAGCAAATGGTCAGTCGTCTCAAAGCTAATGAACAAGAAG
AAAATTACATGTGAAGCACAAGAAAACGAATTCACCAAGGTTGACTCCGAGTTCCAATCC
GAGAAGACTTTGAAAATGGAGGACGTTCAGATCCTAGAGTCATGCATTCAAGATTTCGAA
GATGGACTAGAATCATTATCTAAGTCTTTGATCAAATACAGAGTTTCAATTCTTAACAGC
TTTGGCCATTAA

 

Protein translation: 

MAVSFHVRSHSYPSIPHPQAAHVDEQLARLRSSEETSTSSSSSICQRLDNLQELHESLDK
LIRLPVTQQALGQEKNKKDVEQLLDGSLKILDVCNISKDALSQMKEGLMEIQSILRRKRG
DLSGEVKKYLASRKSFKKTFQKVQKSLKAAQAEDNKDKSLAVFGEAEAVTIAMFDSLFSY
MSGSKTCSKWSVVSKLMNKKKITCEAQENEFTKVDSEFQSEKTLKMEDVQILESCIQDFE
DGLESLSKSLIKYRVSILNSFGH*

 

Alignment of F6P23.10, F6P23.10.1, and T17A5.11.1 These three proteins all have no other matches to the database and all are encoded by single-exon genes.

            1                                                         60
  F6P23.10  MAVSFHVRSHSYPSIPHPQAAHVDEQLARLRSSEETST.SSSSSICQRLDNLQELHESLD 
F6P23.10.1  MAVSFHVRSNSFPSRSHPQAAHVDEQLARLRSSEQASS.SSSSSICQRLDNLQELHESLD 
T17A5.11.1  MMIKNHVRSISLQSRSHPSTAAIEESLDKFLITMNTSTMASSESVHSGLSGLEDLYDCSE 

            61                                                       120
  F6P23.10  KLIRLPVTQQALGQEKNKKD.........VEQLLDGSLKILDVCNISKDALSQMKEGLME 
F6P23.10.1  KLISRPVTQQALSQEHNKKA.........VEQLLDGSLRILDLCNISKDALSEMKEGLME 
T17A5.11.1  DLLKMGSTQRVLSFSDEKKKKKRKVKGEFMEEMLDGSLRLMDICNVSRDLMVETHEHVLG 

            121                                                      180
  F6P23.10  IQSILRRKRG.DLSGEVKKYLASRKSFKK...TFQKVQKSLKAAQAEDNKDKSLAVFGEA 
F6P23.10.1  IQSILRRKRG.DLSEEVKKYLTSRKSLKK...SFQKVQKSLKVTQAEDNNDDTLAVFGEA 
T17A5.11.1  LQSCVRRRKDVDVSGYVGFRKNMRKEVKKLLGSLKNINVGLVMRDHGYDQDGDIHFLAVI 

            181                                                      240
  F6P23.10  EA......VTIAMFDSLFSYMSGSKTCS..KWSVVSKLMNKKKITCEAQ.ENEFTKVDSE 
F6P23.10.1  EA......ITLSLFDSLLSYMSGSKTCS..KWSVVSKLMNKKKVTCEAQ.ENEFTKVDSE 
T17A5.11.1  HAMRRVVYMTVSVLKSFFEFLSGRQNGNDVRSKLALVLMNKKFHDHDKMVKNELENVDSA 

            241                                            290
  F6P23.10  FQSEKTLK...MEDVQILESCIQDFEDGLESLSKSLIKYRVSILNSFGH*
F6P23.10.1  FQSEKTLK...MDDVQNLESCIQDLEDGLESLSKSLIKYRVSFLNILGH*
T17A5.11.1  ICGDSISHDDLHEKLEEVEVWIGKFEKSLEGLFRGLIKTRASLLNIISQ*

 

written 18 Oct 97
Larry Parnell