| Gene | F6P23.13 |
| Putative Identification | predicted protein |
| Position | 79816 to 81236, from the initial methionine to the termination codon |
| Strand | + |
| EST match | H36005 and N65517 |
| Database match | A. thaliana putative receptor kinase F4P9.35 |
CDS: The table below lists the coordinates of the exons for F6P23.13 and which gene prediction programs selected the 5' and 3' termini (GS = GenScan - selects a single-exon gene from 79744 to 80406, Gr = GRAIL, M = MZEF).
| Exon | Range | 5' | 3' |
| 1 | 79744 to 80401 | GS | Gr |
| 2 | 80649 to 80769 | Gr | Gr |
| 3 | 80875 to 81047 | Gr,M | Gr,M |
| 4 | 81136 to 81236 | Gr | Gr |
Complete CDS of F6P23.13
ATGGAAACTTCCTGTTTTACCCTTCTCGGTCTCCTTGTCTCCCTCTCCTTCTTCCTCACT CTCTCCGCCCAAATGACCGGAAACTTCAACTGCAGTGGCTCAACCTCGACGTGTCAATCT CTCGTTGGTTACTCAAGCAAGAACGCAACAACGTTGCGCAATATCCAAACCCTTTTTGCC GTCAAGAACCTCCGCTCGATCCTCGGAGCTAACAATCTCCCACTCAACACCTCACGTGAC CAACGCGTGAACCCGAATCAAGTCGTACGTGTCCCAATCCATTGCTCTTGCTCCAATGGA ACCGGTGTCTCGAACCGGGACATCGAATACACCATCAAGAAAGACGACATACTCTCTTTC GTCGCAACTGAGATTTTCGGTGGTCTCGTTACGTACGAGAAGATCAGTGAGGTTAACAAA ATCCCTGACCCGAACAAAATCGAAATCGGTCAAAAGTTTTGGATCCCTTTGCCTTGTAGC TGTGATAAATTGAACGGTGAGGATGTTGTTCACTACGCACATGTAGTCAAACTAGGGAGC TCTCTCGGTGAGATCGCTGCTCAGTTTGGAACGGACAACACGACGTTGGCTCAGCTCAAT GGAATCATTGGTGACTCTCAGCTTCTTGCTGATAAACCTCTCGACGTCCCTCTCAAAGCT TGTAGCTCTTCTGTGAGGAAGGACTCGTTGGATGCTCCTCTGCTTCTGTCTAACAACTCA TACGTCTTCACTGCAAACAATTGCGTCAAGTGTACTTGTGACGCTTTGAAGAATTGGACT TTAAGCTGTCAATCATCATCTGAGATTAAGCCTTCGAACTGGCAAACCTGCCCACCATTT TCACAATGTGATGGAGCTTTGCTTAACGCCTCTTGCAGACAACCTCGTGATTGCGTCTAT GCTGGTTACTCCAACCAAACCATCTTCACCACAGCTTCCCCAGCTTGTCCAGATTCTGCT GGTCCTGATAACTATGCATCAACGCTCAGCTCAAGCTTCAATTTCGTGATTGTGTTGATT CAGTGTGCTCTGCTTTGTCTCTGCCTTCTCTAG
Protein translation:
METSCFTLLGLLVSLSFFLTLSAQMTGNFNCSGSTSTCQSLVGYSSKNATTLRNIQTLFA VKNLRSILGANNLPLNTSRDQRVNPNQVVRVPIHCSCSNGTGVSNRDIEYTIKKDDILSF VATEIFGGLVTYEKISEVNKIPDPNKIEIGQKFWIPLPCSCDKLNGEDVVHYAHVVKLGS SLGEIAAQFGTDNTTLAQLNGIIGDSQLLADKPLDVPLKACSSSVRKDSLDAPLLLSNNS YVFTANNCVKCTCDALKNWTLSCQSSSEIKPSNWQTCPPFSQCDGALLNASCRQPRDCVY AGYSNQTIFTTASPACPDSAGPDNYASTLSSSFNFVIVLIQCALLCLCLL*
BLAST output demonstrating the similarity between F6P23.13 (query) and F4P9.35 (subject).
gi|2459440 (AC002332) putative receptor kinase [A. thaliana]. F4P9.35 exhibits similarity to light-repressible protein kinase X97774, but, like F6P23.11 does not encode all elements of the general kinase motif. The portion of F4P9.35 shown below is amino-terminal of the potential kinase catalytic domain (residues 360 - 660).
Score = 56.3 bits (140), Expect = 2e-07
Identities = 49/201 (24%), Positives = 88/201 (43%), Gaps =
13/201 (6%)
Query 25 MTGNFNCSGSTSTCQSLVGYSSKNATTLRNIQTLFAVKNLRSILGANNLPLNTSRDQRVN 84
+T F C+G S L +S T +I L V + I NNLP T+R +
Sbjct 46 ITNGFTCNGPPSCRSYLTFWSQPPYNTADSIAKLLNV-SAAEIQSINNLPTATTR---IP 101
Query 85 PNQVVRVPIHCSCSNGT-GVSNRDIEYTI---KKDDILSFVATEIFGGLVTYEKISEVNK 140
++V +P +CSCS+ + G + Y + + D+ VA + + L T + + N+
Sbjct 102 TRELVVIPANCSCSSSSGGFYQHNATYNLSGNRGDETYFSVANDTYQALSTCQAMMSQNR 161
Query 141 IPDPNKIEIGQKFWIPLPCSCDKLNGEDV---VHYAHVVKLGSSLGEIAAQFGTDNTTLA 197
+ ++ G +PL C+C ++V +G S+ IA F + + +
Sbjct 162 YGE-RQLTPGLNLLVPLRCACPTAKQTTAGFKYLLTYLVAMGDSISGIAEMFNSTSAAIT 220
Query 198 QLNGIIGDSQLLADKPLDVPL 218
+ N + D+ + P+ VPL
Sbjct 221 EGNELTSDN-IFFFTPVLVPL 240
written 19 Oct 97
Larry Parnell