Gene F6P23.7
Putative Identification NAM/No-apical-meristem protein
Position 27711 to 28708, from the initial methionine to the termination codon
Strand +
EST match none
Database match petunia NAM gene

 

CDS:  The table below lists the coordinates for the F6P23.7 exons and which exon-predicting algorithms selected the 5' and 3' termini (GS = GenScan, Gr = GRAIL, M = MZEF).

Exon Range 5' 3'
1 27711 to 27867 Gr GS,Gr,M
2 27951 to 28219 GS,Gr,M GS,Gr,M
3 28304 to 28708 GS,Gr,M GS

Complete CDS of F6P23.7

ATGGGAAAAGATATTGAGCTCCCGGGTTTTAGGTTCCACCCGACTGAGGAAGAGCTTCTT
GATTTCTACCTCAAGAACATGGTTTACGGTAAGAGATCGAGTGTCGAAGTCATTGGTTTC
CTTAACATATACCGTCATGATCCATGGGACTTACCTGGTTTATCGAGAATCGGGGAGAGG
GAATGGTACTTCTTTGTACCAAGGGAAAGGAAGCATGGGAACGGTGGGAGGCCAAGCAGG
ACAACTGAAAAAGGATATTGGAAAGCAACTGGATCCGATCGTAAAATCATAAGCTTGTCT
GAGCCAAAACGTGTTATAGGGCTCAAGAAGACGCTTGTGTTCTATAGAGGAAGAGCACCA
GGAGGAAGCAAGACTGATTGGGTGATGAACGAGTTTCGGATGCCCGATAATTGCTCCTTA
CCAAAGGATGTTGTGCTTTGTAAGATATATAGAAAAGCTACTTCATTGAAAGTATTGGAG
CAAAGGGCAGAGATGGAAGCTAAGATGAATCAAACATGTCCTAACTCTCCTCTTTCGTCT
TCCGAGACGATTTCTTTCGTTGGTAAAGAAGAAAACATGATGACTTCGTTCCGTGCTCCT
CAAGTAATAGCTATGGAAGAAGCAAACAAGATCCAAATGCATCAAGAAAACGCGAAAACC
GAAGAGAAACAAAGAGAAGCAGAGACCAAAGAACCTTCTTCATCACTGAAGCTACCGTTT
GGAAGTTTACCAGAGCTACAATTACCAAAACCAGGAGTAGAATGGGACCAGTTGTTGAGT
ATAAGCCCATGGCTCCAGAATCTTACACCAATAGTTAACATATATTGGTAG

 

Protein translation:

MGKDIELPGFRFHPTEEELLDFYLKNMVYGKRSSVEVIGFLNIYRHDPWDLPGLSRIGER
EWYFFVPRERKHGNGGRPSRTTEKGYWKATGSDRKIISLSEPKRVIGLKKTLVFYRGRAP
GGSKTDWVMNEFRMPDNCSLPKDVVLCKIYRKATSLKVLEQRAEMEAKMNQTCPNSPLSS
SETISFVGKEENMMTSFRAPQVIAMEEANKIQMHQENAKTEEKQREAETKEPSSSLKLPF
GSLPELQLPKPGVEWDQLLSISPWLQNLTPIVNIYW*

 

Alignment of NAM and NAM-like proteins:

     Arabidopsis sequences ATAF1, ATAF2, F6P23.7, and the conceptual translation of EST R89959 are aligned to petunia NAM and Tomato SENU5. 

              1                                               50
 A.th. ATAF1  .................................................. 
 A.th. ATAF2  .................................................. 
 Petunia NAM  MENYQHFDCSNSNLPPGFRFHPTDEELITYYLLKKVLDSNFTGRAIAEVD 
   A.th. EST  ...............AGFRFHPTDEELVKFYLxRRCASEPxNVPVIAEID 
Tomato SENU5  MEKVNFLKNGVLRLPPGFRFRPTDEELVVQYLKRKVFSFPLPASIIPEVE 
     F6P23.7  ........MGKDIELPGFRFHPTEEELLDFYLKNMVYGKRSSVEVIGFLN 

              51                                             100
 A.th. ATAF1  .................KEWYFFSPRDRKYPNGSRPNRSAGSGYWKATGA 
 A.th. ATAF2  .................KEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGA 
 Petunia NAM  LNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGK 
   A.th. EST  LYKFNPWELPEMALYGEKEWYFFSHRDRKYPNGSRPNRAAGTGYWKATGA 
Tomato SENU5  VYKSDPWDLPGDM...EQEKYFFSTKEVKYPNGNRSNRATNSGYWKATGI 
     F6P23.7  IYRHDPWDLPGLSRIGEREWYFFVPRERKHGNGGRPSRTTEKGYWKATGS 

              101                                            150
 A.th. ATAF1  DKPI...GLPKP...VGIKKALVFYAGKAPKGEKTNWIMHEYRLADVDRS 
 A.th. ATAF2  DKPI...GKPKT...LGIKKALVFYAGKAPKGIKTNWIMHEYRLANVDRS 
 Petunia NAM  DREI...YSSKTSALVGMKKTLVFYRGRARKGEKSNWVMHEYRLDG...K 
   A.th. EST  DKPI...GKPKT...LGIKKALVFYGGKAPKGIKTxWIMHEYRLAN.... 
Tomato SENU5  DKQIILRGRQQQQQLIGLKKTLVFYRGKSPHGCRTNWIMHEYRLAN.... 
     F6P23.7  DRKIISLSEPKR..VIGLKKTLVFYRGRAPGGSKTDWVMNEFRMPD...N 

              151                                            200
 A.th. ATAF1  VR.KKKNSLRLDDWVLCRIYNKKGATERRGPPPPVVYGDEIMEEKPKVTE 
 A.th. ATAF2  ASVNKKNNLRLDDWVLCRIYNKKGTMEKYFPA..........DEKPRTTT 
 Petunia NAM  FAYHYISRSSKDEWVISRVFQKSCST......VGTTSNGGKKRLNSSFNN 
   A.th. EST  ...................VDRSAST..............NKxxNLxLxD 
Tomato SENU5  ..LESNYHPIQGNWVICRIFLKKRG............NTKNKEENMTTHD 
     F6P23.7  C.......SLPKDVVLCKIYRKATSL......KVL...EQRAEMEAKMNQ 

              201                                            250
 A.th. ATAF1  MVMPPPPQQTSEFAYFDTSDSV.PKLHTTDSSCS...EQVVSPEFTSEVQ 
 A.th. ATAF2  MAEQSSSP.......FDTSDSTYPTLQEDDSSSSGGHGHVVSPDVL.EVQ 
 Petunia NAM  MYQEVSSPSSVSLPPLLESSPYNNTATSAAASKKEHVSCF.......STI 
   A.th. EST  LV.xVGYQxExxMGxFSGxVxxxGxxS....................... 
Tomato SENU5  EVRNREIDKNSPVVSVKMSSRDSEALASANSELKKKASII........FY 
     F6P23.7  TCPNSPLSSSETISFVGKEENMMTSFRAPQVIAMEEANKI.......QMH 

              251                                            300
 A.th. ATAF1  SEPKWKDW.SAVSNDNNNTLDFGFNYIDATVDNAFGGGGSSNQMFPLQDM 
 A.th. ATAF2  SEPKWGELEDALEAFDTSMLVVPWSCCSLTL...LSLSSCISLIISLPSR 
 Petunia NAM  STPSFDPSSVFDISS.NSNTLHSLPAPSFSAILDPSSTFSRNSVFPSLRS 
   A.th. EST  .................................................. 
Tomato SENU5  DFMGRNNSNGVAAST.SSSGITDLTTTNEESDDHEESTSSFNNFTTFKRK 
     F6P23.7  QENAKTEEKQREAETKEPSSSLKLPFGSLPELQLPKPGVEWDQLLSISPW 

              301                                         347
 A.th. ATAF1  FMYMQKPY.......................................
 A.th. ATAF2  IRLSRNHS.......................................
 Petunia NAM  LQENLHLPLFSGGTSAMHGGFSSPLANWPVPETQKVDHSELDCMWSY
   A.th. EST  ...............................................
Tomato SENU5  IN.............................................
     F6P23.7  LQNLTPIVNIYW...................................

 

written 18 Oct 97
Larry Parnell