| Gene | F6P23.9 |
| Putative Identification | leucine-rich repeat disease resistance protein |
| Position | 42999 to 47465, from the initial methionine to the termination codon |
| Strand | + |
| EST match | none |
| Database match | tobacco TMV-resistance protein N and A. thaliana downy mildew resistance protein RPP5 |
CDS: The table below lists the coordinates for each F6P23.9 exon and which gene predicting algorithms selected the 5' and 3' termini (GS = GenScan, Gr = GRAIL, M = MZEF).
| Exon | Range | 5' | 3' |
| 1 | 42999 to 43483 | GS | GS,Gr,M |
| 2 | 44031 to 45264 | GS,Gr,M | GS,Gr,M |
| 3 | 45352 to 45666 | GS,Gr,M | GS,Gr |
| 4 | 45747 to 46712 | GS,Gr,M | GS,Gr |
| 5 | 46804 to 47101 | GS,Gr | Gr |
| 6 | 47140 to 47465 | Gr | Gr |
Complete CDS of F6P23.9
ATGAAAGAAAGTCCCACTTTGAGAAGATATTCCATGGAGGCCTCACGGCAACCTCAAGTG TTCATCAACTTCCGGGGAAGTGAACTACGGTATACCTTTGTCTACTATCTCAGGACGGCC TTGGTAAAAAACGGGATCAACGTTTTTACAGACAACATGGAGCCGAAAGGCCGTAACCAG AAAATTTTATTCAAGAGAATCGAAGAGTCGAAGATCGCACTGGCGATTTTCTCCTCAAGG TATACGGAGTCAAGTTGGTGTCTGGAAGAGCTGGTAAAGATGAAAGAATGCATGGATGCG GAGAAACTCGTGATCATTCCCATCTTCTACATCGTGACTCCATACACCATTAAAAAGCAG ATGGGAGACTTTGGTGACAAGTTTAGAGTGCTGGTGGATTATGTTGATGATGTGACGGAG AAAAAATGGACTGATGCTTTGAAGTCTGTTCCCTTAATTTTAGGCATCACTTACGACGGG CAGAGCGAAGAACAACTTTTAATCAATCAAATCGTTGGGGAGGTTCAGAGAGTAATAAAG ATAATTTCACAAGGAGAAGGAGATGAAAAAAATAAAATGGTGTGCACAAATACCTCTACA GGTTCAAGCTTTATCCCACAAAATAGAAACATGGTAGATCCTGAAAATCAAATTGAGCTC GTTGGACTCAGCCAACGCCTCAAGGAACTAAAAGAAAAGTTGGACCTTAGCCGCAAGGAA ACTCGCATTGTTGGGGTTTTAGGGATGCCCGGAATCGGCAAGACCACACTGGTGAAGAGA TTGTATGATGAGTGGAAACACAATTTCCAGCGTCACTTGCATATGGTGAATATCCGTCAG AAGTCGAAGGAATACGGGACGCATTCCCTAGAGAGAATGATTCTGAAAGAGTTGCTTAGC GACACTTACAATGATATAACTGAAGAGATGACGTACGCTTCTGTAAAGGATGAGCTGCTG AAGAAGAAAGTTCTTCTTGTTCTCGATGACGTGAGTAGCAAGAAACAAATACAAGGTCTT CTCGGGAATCTTAACTGGATTAGGAAAGGAAGCAGGATTGTTATTACTACGCGTGACAAG ATATCCATAAGCCAGTTCGAGTATACTTATGTTGTCCCAAGATTGAATATCACAGATGGC TTAAAGCAATTCAGCTTTTATGCCTTTGAAGATCACAACTGTCCATACCCGGGGAATCTC ATGGATCTTTCCACAAAGTTCGTAGATTATGCCAGAGGCAATCCCTTAGCTCTCAAGATA TTGGGTCGGGAGCTTCTTTCGATAGACAAGGATCAGTGGCCAAAGAGACTCGATACTCTG GCACAACTTCCCATCCCGTATATACAGGATCTATTGAGAGCAAGTTATGATGATCTGAGC AATCAACAGAAAGAAGTTTTTCTTGTCGTAGCCTGGTTCTTTGGATCAGGGGATGAATAT TACATTAGGAGTTTAGTGGATACAGAAGATCCTGATTCTGCCGATGATGCTGCTAGCGAA GTAAGAGATTTCGCAGGCAACTTACTAATTAGCATCTCAAGTGGTCGATTGGAGATGCAT GATTTAATGGCTACGTTCGCCAAAAAACTTTGTTCATCCTTATCTAATGAAAATAACTAT GGATACCAAATGATTTGGAATCATGAAAGCTTTAATGCTGCGGCTAAAAATAAAAGGATG AGATATGTCAATCAACCAAGGAAAAAAGTCACAGAATCGGAAATGGACAATGTCATGGGT ATATTGCTGGACGTGTCTGAAATGGATAATAACATGACCTTAGATTCTAAATTCTTCAGC GAGATGTGCAATCTACGGTACCTCAAAGTCTACAATTCACAATGCTCTCGAGATTGTGAT GTTGGTTGCAAACTGACCTTCCCAGATGGACTTAAATGCTCAATGGAAAATGTCCGATAT CTCTATTGGCTACAATTCCCATTGAAGAAGCTTTCAAAAGCATTTAACCCTAAGAATCTT ATCGAGCTCAACCTCCCTTACAGCAAAATTACACGACTTTGGAAGGAAAGTAAGGAAATA TCCAAACTAAAATGGGTCGATCTCAGCCACTCGAGTGAGCTATGCGATATATCAGGGTTA ATAGGAGCTCATAATATTAGAAGATTGAATCTTGAAGGCTGCATAGAATTGAAAACATTA CCACAAGAGATGCAAGAAATGGAAAGTCTGATTTATCTAAACCTGGGAGGATGCACGCGT CTTGTGTCTCTTCCAGAGTTTAAGTTGAAATCCCTAAAGACTCTCATCTTAAGTCACTGC AAGAACTTTGAACAATTTCCGGTTATTTCAGAATGTTTAGAAGCTCTTTACTTGCAAGGC ACGGCAATAAAGTGTATTCCTACCTCCATTGAGAACCTTCAGAAACTAATCCTATTGGAT CTAAAAGACTGCGAAGTATTGGTAAGTCTTCCTGATTGTCTTGGAAATCTAAGATCTCTT CAAGAGCTAATACTCTCTGGCTGCTCAAAGTTAAAGTTTTTTCCAGAGTTGAAGGAGACC ATGAAATCAATAAAGATTTTGCTGCTTGATGGAACAGCCATTAAGCAGATGCCAATATTA TTGCAGTGTATTCAGTCACAAGGCCACTCTGTTGCAAATAAGACGCTTCCAAACAGTTTA AGTGATTACTACCTACCTTCCTCATTGTTGTCTTTATGCTTAAGTGGAAATGATATCGAG AGCTTGCATGCTAACATCAGCCAGCTTTATCATCTGAAATGGCTTGACTTGAAGAATTGC AAGAAGCTTAAATCTGTGTCGGTGCTTCCACCAAACCTCAAGTGCTTAGATGCACATGGT TGTGACTCACTGGAAGAAGTTGGAAGCCCTCTAGCGGTTCTCATGGTGACAGGAAAAATC CATTGCACATACATTTTCACAAACTGCAACAAATTGGATCAAGTTGCAGAAAGTAACATC ATATCTTTCACTTGGAGGAAAAGCCAGATGATGTCAGATGCTCTGAATCGCTACAATGGG GGATTTGTTTTGGAATCTTTGGTCAGCACTTGCTTTCCTGGATGTGAAGTACCTGCATCA TTCGATCACCAAGCCTATGGAGCATTGTTACAGACGAAATTACCTCGGCACTGGTGTGAT AGTAGGCTTACTGGGATAGCTTTATGCGCTGTTATATTGTTTCCGGACTACCAACATCAA AGCAATCGTTTCTTGGTGAAATGCACTTGTGAGTTCGGAACTGAAGATGGGCCATGTATC AGCTTTAGTTCCATTGTTGGAGGTTGGAGCGAACCAGGCTATGAGCCACGACTATTAAAC ATTAACAAACGTCACGTGGAAAAGCATGGGAATGGATGTATTCCTTCTAAGGCTTCACTC AGATTTCAAGTCACAGATGGTGCGAGTGAGGTAGGAAATTGCCATGTCCTGAAATGTGGC TTTACTTTAGTGTATACACCAAACGATAGTGATGATATCTCTCCGGCGAGAGTAGTTGAT ATCACTACACGGGATAAGGAGGATGGCCTAGAAAATGCAACTTCTAACAAACTTTCAAGA AACGATTATGAATTCTCGCATCAGTCAAACTGTGGAGTGACTTCGAGAAGGGATGAATGT TTCCTTTCTGAAGAGCTTCCATAA
Protein translation:
MKESPTLRRYSMEASRQPQVFINFRGSELRYTFVYYLRTALVKNGINVFTDNMEPKGRNQ KILFKRIEESKIALAIFSSRYTESSWCLEELVKMKECMDAEKLVIIPIFYIVTPYTIKKQ MGDFGDKFRVLVDYVDDVTEKKWTDALKSVPLILGITYDGQSEEQLLINQIVGEVQRVIK IISQGEGDEKNKMVCTNTSTGSSFIPQNRNMVDPENQIELVGLSQRLKELKEKLDLSRKE TRIVGVLGMPGIGKTTLVKRLYDEWKHNFQRHLHMVNIRQKSKEYGTHSLERMILKELLS DTYNDITEEMTYASVKDELLKKKVLLVLDDVSSKKQIQGLLGNLNWIRKGSRIVITTRDK ISISQFEYTYVVPRLNITDGLKQFSFYAFEDHNCPYPGNLMDLSTKFVDYARGNPLALKI LGRELLSIDKDQWPKRLDTLAQLPIPYIQDLLRASYDDLSNQQKEVFLVVAWFFGSGDEY YIRSLVDTEDPDSADDAASEVRDFAGNLLISISSGRLEMHDLMATFAKKLCSSLSNENNY GYQMIWNHESFNAAAKNKRMRYVNQPRKKVTESEMDNVMGILLDVSEMDNNMTLDSKFFS EMCNLRYLKVYNSQCSRDCDVGCKLTFPDGLKCSMENVRYLYWLQFPLKKLSKAFNPKNL IELNLPYSKITRLWKESKEISKLKWVDLSHSSELCDISGLIGAHNIRRLNLEGCIELKTL PQEMQEMESLIYLNLGGCTRLVSLPEFKLKSLKTLILSHCKNFEQFPVISECLEALYLQG TAIKCIPTSIENLQKLILLDLKDCEVLVSLPDCLGNLRSLQELILSGCSKLKFFPELKET MKSIKILLLDGTAIKQMPILLQCIQSQGHSVANKTLPNSLSDYYLPSSLLSLCLSGNDIE SLHANISQLYHLKWLDLKNCKKLKSVSVLPPNLKCLDAHGCDSLEEVGSPLAVLMVTGKI HCTYIFTNCNKLDQVAESNIISFTWRKSQMMSDALNRYNGGFVLESLVSTCFPGCEVPAS FDHQAYGALLQTKLPRHWCDSRLTGIALCAVILFPDYQHQSNRFLVKCTCEFGTEDGPCI SFSSIVGGWSEPGYEPRLLNINKRHVEKHGNGCIPSKASLRFQVTDGASEVGNCHVLKCG FTLVYTPNDSDDISPARVVDITTRDKEDGLENATSNKLSRNDYEFSHQSNCGVTSRRDEC FLSEELP*
Protein motifs: Several disease resistance proteins contain a signature sequence for an ATP/GTP-binding site. This P-loop domain is found in F6P23.9 from residues 248 to 255 [GMPGIGKT].
written 18 Oct 97
Larry Parnell