| Gene | T10M13.16.1 |
| Putative identification | hypothetical protein |
| Position | 81366 - 81917, from the initial methionine to the termination codon |
| Strand | - |
| EST match | none |
| Database match | open reading frame from chromosome V P1 clone MAC9 |
CDS: The table below lists the coordinates of the single T10M13.16.1 exon and which algorithm selected the given termini (GS = GenScan, Gr = GRAIL, M = MZEF, NPG = NetPlantGene).
| Exon | Range | 3' | 5' |
|---|---|---|---|
| 1 | 81366 - 81917 | GS, Gr | GS, Gr |
Complete CDS of T10M13.16.1
ATGGAAATTCAAAATCAGATTAATGGTGGCCAAGAAGAGATCAAGAATATGAAGAAGAAG AAACGATCACGTGGTTTTCACGTGATCGGTGTCGTTTTATACATGCTTCGGCGTCGGAGG AGGAGCAAGCCGCTTAATAACGGGTTTTGGCGGCGAGTTGTCGAGTCCTTTGGGCAGTTG AAAAACGACAATGTTACGGTACTTCCATCGTCGTCTAATATTACGATACTACCACCATCA TCTTCTCCGGTGACGGATGAAGTTCCGGCGAGTAGTGACGATCAGGTATCGGAGATGGTT GAGGTTCTCACGGCGACGTCTAGTTCTTGCTCTTCGGGAATCTCGGGATATGGATCAGCA AAGTCGTTGCGAGATATGGATTGTCTTGATGAAGATGATGATGATGATGAAAATTATGGT AATGATGATGGAGGTGATGAGATGATTGATGCGAAAGCTGAGGAGTTTATTGTGAGATTT TATGAACAGATGAGGATGCAAAATCAGGCTTATACAGAACGTTACAAAGCTAAAGAGATG ATGATGGTCTAA
Protein translation
MEIQNQINGGQEEIKNMKKKKRSRGFHVIGVVLYMLRRRRRSKPLNNGFWRRVVESFGQL KNDNVTVLPSSSNITILPPSSSPVTDEVPASSDDQVSEMVEVLTATSSSCSSGISGYGSA KSLRDMDCLDEDDDDDENYGNDDGGDEMIDAKAEEFIVRFYEQMRMQNQAYTERYKAKEM MMV*
Alignment of T10M13.16.1 and the open reading frame in MAC9
. . . . .
1 MEIQNQINGGQEEIKNMKKKKRSRGFHVIGVVLYMLRRRRRSKPLNNGFW 50
|||| ||| |. ||::|||||| | | ||
1 ...............MKKKKKSSRGMHMFSVVMFMLRRRRTS...NTRFW 32
. . . . .
51 RRVVESFGQLKNDNVTVLPSSSNITILPPSSSPVTDEVPASSDDQVSEMV 100
|||||| ..: | |||:| . |: ||..|| .
33 RRVVESVRKVR..........SEITIMPVTEMG.GDDGDNEVDDRLSETM 71
. . . . .
101 EVLTATSSSCSSGISGYGSAKSLRDMDCLDEDDDDDENYGNDDGGDEMID 150
|| || ||| |||||||||| ||||:| ||| || | . |||:|||
72 EVFTAPSSSSSSGISGYGSAMSLRDLD.YPYDDDIDECYSDVQGGDDMID 120
. . .
151 AKAEEFIVRFYEQMRMQNQAYTERYKAKEMMMV*. 184
|||||||||| ||:|||| ||:| ||| .:|
121 EKAEEFIVRFYAQMKMQNQVYTDRCKAKGILMNF* 155
written 3 Aug 98
Larry
Parnell