Gene T10M13.16
Identification importin AtKAP alpha
Position 77149 to 79867, from the initial methionine to the termination codon
Strand -
EST match none
Database match AtKAP alpha cDNA, Y09511

 

CDS:  The table below lists the coordinates for each exon of T10M13.16 and which gene prediction programs selected the 3' and 5' termini (Fe = FEXA, Fg = FGENEA, GS = GenScan, Gr = GRAIL, M = MZEF, NPG = NetPlantGene - selects splice sites only, not exons).

Exon Range 3' 5'
1 79652 to 79867 Fe, Fg, GS, Gr, M, NPG Fe, Gr
2 79180 to 79279 GS, Gr, M, NPG GS, Gr, M, NPG
3 78998 to 79089 Fg, GS, Gr, M, NPG Fg, GS, Gr, M, NPG
4 78763 to 78894 Fg, GS, Gr, M, NPG Fg, GS, Gr, M
5 78451 to 78636 Gr, NPG Gr, NPG
6 78197 to 78360 Fe, Fg, GS, Gr, M, NPG Fe, Fg, GS, Gr, M, NPG
7 78031 to 78109 GS, Gr, NPG GS, Gr, NPG
8 77828 to 77956 GS, Gr, M, NPG GS, Gr, M, NPG
9 77610 to 77737 Gr, M, NPG Gr, M, NPG
10 77149 to 77518 Gr GS, Gr, NPG

Complete CDS of T10M13.16. The two differences between T10M13.16 and Y09511 are highlighted in red.

ATGTCTCTCAGACCTAGCGCGAAGACGGAGGTGCGACGGAATCGGTACAAAGTAGCGGTC
GATGCGGAGGAAGGACGGCGGAGGCGAGAGGATAACTTGGTTGAGATCAGGAAGAACAAG
AGAGAGGAAAATTTGCAGAAGAAGAGATTTACGTCTTCTATGGCTTTTGGCTCAGCAACG
GGACAAACGGAACAGGATCTTTCTTCAGCGAACCAATTAAAAGATAATCTACCTGCTATG
GTTGCTGGAATCTGGTCAGAGGATAGCAATTCACAATTGGAGGCAACAAATCTCTTGCGG
AAACTGCTTTCTATTGAACAAAATCCTCCTATCAATGAAGTTGTACAATCTGGTGTTGTT
CCTCGTGTTGTGAAGTTTCTTTCCAGGGATGACTTCCCCAAACTTCAGTTTGAGGCAGCT
TGGGCGCTCACCAACATTGCTTCAGGGACATCAGAGAACACAAATGTCATCATTGAAAGT
GGAGCTGTCCCGATATTCATCCAACTTCTCAGCTCTGCTAGTGAAGATGTCCGCGAACAG
GCTGTTTGGGCATTGGGAAATGTTGCTGGAGACTCACCAAAATGCCGGGATTTAGTCCTA
AGTTACGGTGCCATGACACCTCTTCTGTCTCAATTCAATGAGAATACAAAGCTTTCAATG
CTGAGAAATGCTACATGGACATTATCAAACTTCTGCAGAGGGAAGCCCCCACCCGCATTT
GAACAGACACAACCAGCTTTACCAGTTCTTGAGCGCCTTGTGCAATCAATGGATGAAGAA
GTTCTCACAGATGCATGCTGGGCTCTGTCATACCTCTCGGATAATTCAAACGACAAAATA
CAAGCAGTCATTGAAGCAGGAGTTGTTCCTCGCCTCATCCAGCTCTTAGGTCATTCGTCG
CCATCAGTGCTGATTCCTGCTCTTCGTACCATTGGAAATATTGTAACCGGGGATGATCTA
CAGACTCAGATGGTTCTCGACCAGCAAGCGCTTCCTTGTCTTTTGAACCTTCTAAAAAAC
AATTACAAGAAGAGTATCAAGAAGGAAGCTTGCTGGACTATCTCCAACATTACAGCTGGA
AATGCAGATCAGATACAAGCAGTGATTGATGCAGGTATAATCCAGTCTCTTGTTTGGGTG
CTTCAAAGTGCAGAGTTCGAAGTAAAAAAAGAAGCTGCTTGGGGAATATCAAATGCTACT
TCTGGTGGCACTCATGATCAAATCAAGTTTATGGTGAGCCAAGGCTGTATCAAACCTCTA
TGCGATCTCCTTACTTGCCCAGATCTGAAAGTTGTAACGGTTTGCTTAGAAGCACTAGAG
AACATTCTCGTGGTTGGAGAAGCAGAGAAGAACTTAGGTCACACAGGAGAAGACAACCTC
TACGCTCAAATGATTGACGAAGCAGAAGGGTTAGAGAAGATTGAGAATCTTCAGAGTCAC
GACAACAATGATATCTACGACAAAGCCGTGAAGATCCTCGAAACATTTTGGACTGAAGAC
AATGAAGAAGAAGGCAACGACGAGAATCATGCTCCACAATCTGGTTTCCAGTTCGGAAGC
ACCAATGTTCCTCCTGGTCAATTCAACTTTATTTGA

 

Protein translation:

MSLRPSAKTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNKREENLQKKRFTSSMAFGSAT
GQTEQDLSSANQLKDNLPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVV
PRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQ
AVWALGNVAGDSPKCRDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPPAF
EQTQPALPVLERLVQSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHSS
PSVLIPALRTIGNIVTGDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITAG
NADQIQAVIDAGIIQSLVWVLQSAEFEVKKEAAWGISNATSGGTHDQIKFMVSQGCIKPL
CDLLTCPDLKVVTVCLEALENILVVGEAEKNLGHTGEDNLYAQMIDEAEGLEKIENLQSH
DNNDIYDKAVKILETFWTEDNEEEGNDENHAPQSGFQFGSTNVPPGQFNFI*

 

Comparison of AtKAP alpha (T10M13.16, top) and AtKAP

                  .         .         .         .         .
       1 MSLRPSAKTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNKREENLQKKRF 50
         |||||.||||||||||||||||||||||||||:|||||.||||.| ||| 
       1 MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLMKKRR 50
                  .         .         .         .         .
      51 TSSMAFGSATGQTEQDLSSANQLKDNLPAMVAGIWSED.SNSQLEATNLL 99
             |     |      .| ..  |.|  ||||:||:| . . | .|   
      51 EGMQAL...QGFPSASAASVDKKLDSLKDMVAGVWSDDPAIASLRSTTQF 97
                  .         .         .         .         .
     100 RKLLSIEQNPPINEVVQSGVVPRVVKFLSRDDFPKLQFEAAWALTNIASG 149
         |||||||..||| ||: .||||| |.|| ::|:| :||||||||||||||
      98 RKLLSIERSPPIEEVISAGVVPRFVEFLKKEDYPAIQFEAAWALTNIASG 147
                  .         .         .         .         .
     150 TSENTNVIIESGAVPIFIQLLSSASEDVREQAVWALGNVAGDSPKCRDLV 199
         ||:.| |:|:  |||||:|||.| |:||||||||||||||||||:|||||
     148 TSDHTKVVIDHNAVPIFVQLLASPSDDVREQAVWALGNVAGDSPRCRDLV 197
                  .         .         .         .         .
     200 LSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPPAFEQTQPALPV 249
         |  ||   ||.| ||. ||||||||||||||||| || | |:| .|||| 
     198 LGCGAKEGLLNQLNEHAKLSMLRNATWTLSNFCRPKPQPHFDQVKPALPA 247
                  .         .         .         .         .
     250 LERLVQSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHS 299
         ||||: |  || ||||||||||||| .||||| ||:|||||:|::|| | 
     248 LERLIHSDAEEALTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHH 297
                  .         .         .         .         .
     300 SPSVLIPALRTIGNIVTGDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKE 349
         |||||||||||:||||||||:||| |:.  ||||| |||  |:|||||||
     298 SPSVLIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKE 347
                  .         .         .         .         .
     350 ACWTISNITAGNADQIQAVIDAGIIQSLVWVLQSAEFEVKKEAAWGISNA 399
         |||||||||||| |||| |::| :|  || .||.|||::|||||| ||||
     348 ACWTISNITAGNKDQIQTVVEANLISPLVSLLQNAEFDIKKEAAWAISNA 397
                  .         .         .         .         .
     400 TSGGTHDQIKFMVSQGCIKPLCDLLTCPDLKVVTVCLEALENILVVGEAE 449
         ||||.|||||::| ||||||||||| ||| :::||||| ||||| |||||
     398 TSGGSHDQIKYLVEQGCIKPLCDLLVCPDPRIITVCLEGLENILKVGEAE 447
                  .         .         .         .         .
     450 KNLGHTGEDNLYAQMIDEAEGLEKIENLQSHDNNDIYDKAVKILETFWTE 499
         |||||||: | ||.:||:||||||||||||||||:||:||||||||:| |
     448 KNLGHTGDMNYYAKLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLE 497
                  .         .         .         .         .
     500 DNEEEGNDEN..HAPQSGFQFGSTNVPPGQFNFI*............... 532
         : ::|          |.|||||    |    .                  
     498 EEDDETQQPPGVDGSQAGFQFGGNQAPVPSGDSTSAEGMELEACNLRMVK 547

     548 GQSQSESSFTAMVILQVWSGPGLRGLYRVVGLKVQRLRKCLVHCPGLFF*

written 30 Jul 97
updated 29 Dec 97
Larry Parnell