Gene T10M13.17
Putative Identification hypothetical protein
Position 84460 to 84906, from the initial methionine to the termination codon
Strand +
EST match none
Database match open reading frame at the very end of clone MBB18

 

Note:  It is possible that this single exon gene as well as its database match (see below) represent a type of genomic repeat sequence or a pseudogene.

 

CDS:  The table below lists the coordinates of the single T10M13.17 exon and which exon predicting programs selected the 5' and 3' termini (GS = GenScan, Gr = GRAIL).

Exon Range 5' 3'
1 84460 - 84906 GS GS

Complete CDS of T10M13.17

ATGGCTCTTCTATGGGGAAGAAAAGGTGGAGTTTTCAAAAAATGGCCATTGTTCGAACTA
CGTAGCTTGTTCTTCAAGCATCTCAAAGCCCTAGCTCATCATCATAGTAACGGTGACCGT
TATTACGGAGAACGCCAGCTTTCCTTTGATGAAACGCCGTTATTTAACGTCAAGAAGAAG
ATGCATTGTCCTACTTCGTCTATGAGGTTCCTCCTCCTCCCCTGCTTTGCTCCTCCCGTA
GATTTTGACTATGACTTTGAAATGGACGGTCAAGATTATTCCGACGAGGTACAATCGTAC
GGTTACGATGAATCTTGTTCGGAAGAAGAGAAAGGGGTGGATGTGAGAGCAGAGGAGTTC
ATTGCTAAGTTCTATGAGCAGATCAAGTTGCAGAGACAAGTGTCTTATTTGAAATACAAA
CAACACAACGACGCCGTATTATTATAG

 

Protein translation

MALLWGRKGGVFKKWPLFELRSLFFKHLKALAHHHSNGDRYYGERQLSFDETPLFNVKKK
MHCPTSSMRFLLLPCFAPPVDFDYDFEMDGQDYSDEVQSYGYDESCSEEEKGVDVRAEEF
IAKFYEQIKLQRQVSYLKYKQHNDAVLL*

 

Comparison to MBB18 open reading frame. T10M13.17 is compared to the open reading frame encoded on clone MBB18 (length = 82766 bp) from 82468 to 82764 adjoined to the open reading from the beginning of MKD10, the neighboring clone on chromosome V; the - represents where these two sequences were joined.

                     .         .         .         .         .
T10M13    1 MALLWGRKGGVFKKWPLFELRSLFFKHLKALAHHHS.NGDRY...YGERQ 46
 MBB18    1 MALLWGRKGGIFKRWHMFELRNLFSKHLKALNHHNSVDNNRYLTRYGEKQ 50
                     .         .         .         .         .
T10M13   47 LSFDETPLFNVKKKMHCPTSSMRFLLLPCFAPPVDFDYDFEMDG.QDYSD 95
 MBB18   51 LSFDETPIFNV..KMHRPT.SMRF.LLPCIARPADFDYDFELDGTQDDTD 96
                     .         .         .         .         .
T10M13   96 EVQ.SYGYDESCS.............EEEKGVDVRAEEFIAKFYEQIKLQ 131
 MBB18   97 DVR-YGYYDGSCNEKCDRSANDDQEEEEEKGVDVRAEEFIAKFYEQMKLQ 145
                     .
T10M13  132 RQVSYLKYKQHNDAVLL* 148
 MBB18  146 RQISYLQYKEHNDVV*   160

 

written 30 Jul 97
updated 5 Aug 98
Larry Parnell