Gene T10M13.20/T2H3.13
Putative Identification drought-induced-19-like 1
Position 99041 to 100468, from the initial methionine to the termination codon
Strand +
EST match T42823 and AA395188
Database match Di19 (drought-induced 19, X78584)

 

CDS:  The table below lists the coordinates for each exon of T10M13.20 and which exon predicting programs selected the 5' and 3' termini (GS = GenScan, Gr = GRAIL, M = MZEF, NPG = NetPlantGene - selects splice sites only, not exons). Exon termini determined by ESTs AA395188 or T42823 are so designated.

Exon Range 5' 3'
1 99041 - 99122 GS, Gr EST, GS, Gr, M, NPG
2 99329 - 99462 EST, GS, Gr, M, NPG EST, Gr, M, NPG
3 99795 - 99872 EST, Gr, M, NPG EST, Gr, M, NPG
4 100023 - 100255 EST, Gr, NPG EST, NPG
5 100351 - 100468 EST, M, NPG  

Alternate exons not used in building the gene model. GenScan predicts a terminal exon from 99329 to 99522. GRAIL does not select any model exons in this region. The EST (T42823) match to a GRAIL "intergenic region" necessitated assembly of shadow exons. A terminal exon is selected from 100023 to 100258. MZEF selects internal exons from 99034 to 99122 and from 100351 to 100424. NetPlantGene predicts many putative splice sites in this region, only the splice donor at 100424 has a high confidence score (0.96).

Complete CDS of T10M13.20

ATGGAAGAAGATTTGTTGGGCATTTGTGGGTTTGATTCGTCGAAGAAATATCGATTAGAA
GAACTTGCCAAGTATCAGTCGGGTTCATGTATTGAGTTTGAAGATGATGATGAAATGGCA
GTGGATTATCCATGCCCGTTTTGCTCAGATGATTATGATTTAGTTGAATTGTGTCACCAT
ATCGATGAGGAGCATCAACTAGACGCCAACAATGGGATATGTCCGGTTTGTAGCAGACGA
GTGAAGATGCATATGGTTGATCACATTACCACTCAGCATAGAGATGTCTTCAAGAGACTT
TACAAGGATGAGTCATATTCAGCATTTTCTCCAGGGACTAGGAAATACTTACAGTCTCTA
ATCGATGAGCCGTTGTCTACTAATCATACATCTAAAAGTGTTCTGGACCCATTATTATCA
TTTATATACAATCCGCCGTCACCAAAGAAGTCCAAGCTTGTACAACCTGATTCATCTAGT
GAAGCAAGCATGGAAGACAATAGCTTAATAAGGGATTCAACAGAAAAAGACTGGGAATCG
CCGTCTCCCTTGTCAGATACAGAGCTACTAGAGAAGGCAAAGAAGAGAGAGTTTGTACAA
GGTTTAATSTCATCAGCCATATTTGATCACATTTACAACTTCTAA

 

Protein sequence

MEEDLLGICGFDSSKKYRLEELAKYQSGSCIEFEDDDEMAVDYPCPFCSDDYDLVELCHH
IDEEHQLDANNGICPVCSRRVKMHMVDHITTQHRDVFKRLYKDESYSAFSPGTRKYLQSL
IDEPLSTNHTSKSVLDPLLSFIYNPPSPKKSKLVQPDSSSEASMEDNSLIRDSTEKDWES
PSPLSDTELLEKAKKREFVQGLISSAIFDHIYNF*

 

Multiple sequence analysis of putative drought induced gene products

Di19 - drought induced 19 (X78584), F2P16.10 - gene on BAC F2P16 from chromosome V (PID:g2191179), T10M13.20 - gene on BAC T10M13 from chromosome IV

           1                                                         60
     Di19  ~~~~~MDADSKRFLATLRSRS..EMLMG.FEEIDGDDDFQEEFACPFCAESYDIIGLCCH 
 F2P16.10  ~~~~~MFLLKPICIGTSRMERVFNNFLG.FEEIEGEDDFREEYACPFCSDYFDIVSLCCH 
T10M13.20  MEEDLLGICGFDSSKKYRLEELAKYQSGSCIEFEDDDEMAVDYPCPFCSDDYDLVELCHH 

           61                                                       120
     Di19  IDDEHTLESKNAVCPVCSLKVGVDIVAHITLHHGSLFK.LQ................RKR 
 F2P16.10  IDEDHPMDAKNGVCPICAVKVSSDMIAHITLQHANMFK.ISFLLSLPLHSLTKYYVTRKR 
T10M13.20  IDEEHQLDANNGICPVCSRRVKMHMVDHITTQHRDVFKRLYKDESYSAFSPGTRKYLQSL 

           121                                                      180
     Di19  KSRKSGTNSTLSLLRKGLREGDLQRLLGFTSRN.GSVASSVTPDPLLSSFISPTR..... 
 F2P16.10  KSRRGGAQSMLSILKREFPDGNFQSLFEGTSRAVSSSSASIAADPLLSSFISPMADDFFI 
T10M13.20  IDEPLSTNHTSKSVLDPLLSFIYNPPSPKKSKLVQPDSSS.EASMEDNSLIRDSTEKDWE 

           181                                                    238
     Di19  SQSSPAPRQTKNVSEDKQIERKRQVFISPVSLKDREERRHKSEFVQRLLSSAIFDEV~
 F2P16.10  SESSLCADTSSAKKTLNQSLPERNVEKQSLSAEDHREKLKQSEFVQGILSSMILEDGL
T10M13.20  SPSPLSDTELLEKAKKREFVQGLISSAIFDHIYNF*~~~~~~~~~~~~~~~~~~~~~~

written 31 Jul 97
updated 4 Aug 98
Larry Parnell