| Gene | T10M13.21 |
| Putative Identification | hypothetical protein |
| Position | 100585 to 102131, from the initial methionine to the termination codon |
| Strand | - |
| EST match | none |
| Database match | --- |
CDS: The table below lists the exon coordinates for T10M13.21 and which gene prediction programs selected the 3' or 5' termini for the exons (GS = GenScan, Gr = GRAIL, M = MZEF, NPG = NetPlantGene - selects splice sites only, not exons).
| Exon | Range | 3' | 5' |
|---|---|---|---|
| 1 | 101853 - 102131 | GS, M, NPG | Gr |
| 2 | 101678 - 101771 | GS, M, NPG | GS, NPG |
| 3 | 101152 - 101570 | GS, M, NPG | GS, Gr, M, NPG |
| 4 | 100585 - 101061 | GS, Gr | GS, Gr, NPG |
Alternate exons not used in building the gene model.GenScan predicts an initial exon from 101853 to 102182. GRAIL predicts an initial exon from 101837 to 102131. MZEF predicts internal exons from 101853 to 101926 and from 101678 to 101698. NetPlantGene predicts many putative splice sites in this region, notably a splice donor at 102352 (confidence score = 0.96) and a splice acceptor at 102207 (1.00).
Complete CDS of T10M13.21
ATGGATCAGTATTTCATCGAGCTTATGGTGGAACAAGTTAGAAAAGGCAACAGATTTGAA GATCATTTGTTTAGTAAACGAGCTTGGAAGTTCATGTCTTGTTCCTTCACTGCCAAGTTC AAGTTTCTTTATGGCAAAGATGTTTTGAAAAACAGGCATAAGACATTGAGGAACTTGTTT AAATCTGTGAATAATCTTTTGATAGAAGATGGTTTTAGTTGGGATGATACTAGACAGATG GTTGTTGCTGATAACTGCGTTTGGGATGAGTATCTTAAGATTCATCCTGATTCGAGATCT TTTCGGATAAAGTCTATACCTTGTTACAAAGATCTGTGCTTGGTTTACTCAGATGGAATG TCTGAGCACAAAGCTGAGGAGAGTATTAGTGAGGGAGAATCCAAGACACTGATTCAGGAA GATGATGGGTACAACAGAATATGTGAATCGTCAACAGTCAGGTCTAACTCAAAAGGAAGC AGTGTCACACGGTGCAGGACTACTTGGCATCCTCCAATGGACCGGTATTTCATTGATCTG ATGTTGGACCAAGCGAGGAGAGGAAACCAGATTGAAGGTGTTTTCAGGAAACAAGCATGG ACTGAGATGGTTAATCTCTTCAATGCGAAATTTGAGTCTAACTTTGATGTTGATGTGTTG AAGAACCGGTATAAGTCTCTGAGAAGACAGTTCAACGCGATCAAGAGTATTCTTCGATCA GATGGGTTTGCTTGGGATAATGAGCGTCAAATGGTTACAGCTGATAATAATGTATGGCAA GACTATATAAAGGCTCATAGAGATGCAAGGCAATTTATGACTCGGCCAATTCCGTACTAT AAAGATCTGTGTGTGCTCTGTGGCGATTCTGGGATCGAAGAAAACGAATGCTTTGTAGCT ATGGATTGGTTTGACCCTGAAACTGAATTCCAAGAATTTAAGTCCAGTGGTACTACAGAT TTGTCTATTTCAGCTGAGGAAGAAGATAGCAACTCTCTTTTGTTTGACCCCAAGAACAAA AGAGATCAACTTGCTAATACTGATACAAGCCCTATAAACCCGAAAAAGCCTCGAGTTGAT GAAACCCAAACCATGTCAATAGAGGACACGGTTGAGGCTATTCAAGCGTTACCAGACATG GACGATGAACTTATATTGGATGCTTGTGATCTGCTTGAAGATAAACTCAAGGCGAAAACT TTCTTGGCTCTAGATGTGAAACTACGCAAGAAGTGGTTGTTAAGGAAACTCCGACCTCAA GTGACTTGA
Protein translation:
MDQYFIELMVEQVRKGNRFEDHLFSKRAWKFMSCSFTAKFKFLYGKDVLKNRHKTLRNLF KSVNNLLIEDGFSWDDTRQMVVADNCVWDEYLKIHPDSRSFRIKSIPCYKDLCLVYSDGM SEHKAEESISEGESKTLIQEDDGYNRICESSTVRSNSKGSSVTRCRTTWHPPMDRYFIDL MLDQARRGNQIEGVFRKQAWTEMVNLFNAKFESNFDVDVLKNRYKSLRRQFNAIKSILRS DGFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRPIPYYKDLCVLCGDSGIEENECFVA MDWFDPETEFQEFKSSGTTDLSISAEEEDSNSLLFDPKNKRDQLANTDTSPINPKKPRVD ETQTMSIEDTVEAIQALPDMDDELILDACDLLEDKLKAKTFLALDVKLRKKWLLRKLRPQ VT*
written 30 Jul 97
updated 31 Jul 97
updated 4 Aug 98
Larry
Parnell