Gene: T10P11.14
Putative Identification: NADH dehydrogenase 24 kDa subunit
Position: 74188 to 76520, from putative 5'-UTR to termination codon
Strand: -
EST match: none
Database match: NADH dehydrogenase 24 kDa subunit of cattle, human, and rat
Likely start codon encoded by residues 76506 to 76508; similarity to B. rapa
EST L33594 extends to position 76520.
CDS: exon terminus predicted by Gr=Grail
5' 3' M=MZEF
exon 1 76440 to 76508 Gr Gr
exon 2 76149 to 76214 Gr,M Gr,M
exon 3 75402 to 75518 Gr,M Gr,M
exon 4 75190 to 75267 Gr Gr
exon 5 74998 to 75100 Gr,M
exon 6 74857 to 74903 Gr Gr
exon 7 74667 to 74744 Gr Gr
exon 8 74485 to 74550 Gr,M Gr,M
exon 9 74188 to 74295 Gr Gr,M
ATGCTGGCTAGGCTCGCTGCGAAGCGTCTTCTCGAGATCCGTCAAGTTTTCCGTCAACCA
ACCTCTCAGCATCTGGATTCTCCTGATAACAAACCCGATCTTCCATGGGAGTTTTCAGAG
GCTAACCAATCTAAGGTTAAGGAGATTCTCTCTTACTATCCATCCAATTACAAGCAGTCC
GCAGTTATTCCTCTCCTAGATCTTGCACAACAGCAGAATGGAGGCTGGCTCCCTGTTTCA
GCAATGAATGCGGTTGCTAAAGTTATAGAAGTTGCCCCTATCCGTGTTTATGAGGTTGCA
ACATTTTACTCAATGTTCAACAGAGCAAAGGTTGGAAAGTATCACCTTCTAGTTTGTGGC
ACAACACCTTGCATGATCCGTGGTTCACGAGACATCGAATCAGCTTTGCTAGACCATTTG
GGAGTGAAACGCGAGGTCACAAAGGATGGTTTGTTCTCTGTTGGAGAGATGGAGTGCATG
GGATGTTGTGTTAATGCACCCATGATCACTGTGGCTGACTATTCCAATGGATCAGAAGGA
TATACATATAACTATTTCGAAGATGTTACACCTGAGAAAGTCGTAGAAATTGTTGAAAAG
CTGAGAAAAGGAGAAAAGCCACCGCATGGAACTCAGAACCCGAAGAGGATCAAGTGTGGA
CCAGAAGGAGGGAATAAGACACTGCTTGGTGAGCCTAAGCCACCACAATTCCGTGATCTT
GATGCATGCTAA
Protein Translation:
MLARLAAKRLLEIRQVFRQPTSQHLDSPDNKPDLPWEFSEANQSKVKEILSYYPSNYKQS
AVIPLLDLAQQQNGGWLPVSAMNAVAKVIEVAPIRVYEVATFYSMFNRAKVGKYHLLVCG
TTPCMIRGSRDIESALLDHLGVKREVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEG
YTYNYFEDVTPEKVVEIVEKLRKGEKPPHGTQNPKRIKCGPEGGNKTLLGEPKPPQFRDL
DAC*
Alignment of NADH dehydrogenase 24 kDa subunit sequences from cattle, human,
Neurospora and Arabidopsis.
1 60
BovNADH24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LFVHRDTPENNPETP
HumNADH24 ~~~~~~~~MFFSAALRARAAGLTAHWGRHVRNLHKTAMQNGAGGALFVHRDTPENNPDTP
NcNOU24 MATKLTPFLMRTAVRAATRLSTKPSTIAPVSRACLSISARRPSDTLMVHRNTPDNNPDIP
T10P11.14 ~~~~~~~~~~~~~~~~~~~~~~~~~MLARLAAKRLLEIRQVFRQPTSQHLDSPDNKPDLP
61 120
BovNADH24 FDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQN.GWLPISAMNKVAEILQVPPMR
HumNADH24 FDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQN.GWLPISAMNKVAEVLQVPPMR
NcNOU24 FKFSADNEKVIEEIIKRYPPQYKKAAVMPLLDLGQRQH.GFCSISVMNEVARLLEMPPMR
T10P11.14 WEFSEANQSKVKEILSYYPSNYKQSAVIPLLDLAQQQNGGWLPVSAMNAVAKVIEVAPIR
121 180
BovNADH24 VYEVATFYTMYNRKPVGKYHIQVCTTTPCMLR..NSDSILEAIQKKLGIKVGETTPDKLF
HumNADH24 VYEVATFYTMYNRKPVGKYHIQVCTTTPCMLR..NSDSILEAIQKKLGIKVGETTPDKLF
NcNOU24 VYEVASFYTMYNRTPVGKFHVQACTTTPCQLGGCGSDVIVKAIKEHLGIKQGETTPDGLF
T10P11.14 VYEVATFYSMFNRAKVGKYHLLVCGTTPCMIR..GSRDIESALLDHLGVKR.EVTKDGLF
181 240
BovNADH24 TLIEVECLGACVNAPMVQIND..........NYYEDLTPKDIEEIIDELK.....AGKIP
HumNADH24 TLIEVECLGACVNAPMVQIND..........NYYEDLTAKDIEEIIDELK.....AGKIP
NcNOU24 TFIEVECLGACANAPMVQIND..........DYFEDLTPETIKQVLSALKESVTDVSKAP
T10P11.14 SVGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPEKVVEIVEKLRKGE....KPP
241 276
BovNADH24 KPGPRSGRFSCEPAGGLTSLTEPPKGPGFGVQAGL*
HumNADH24 KPGPRSGRFSCEPAGGLTSLTEPPKGPGFGVQAGL*
NcNOU24 QPGPQSGRQTCENAAGLTSLTSEPYGPEV.TRSDL*
T10P11.14 HGTQNPKRIKCGPEGGNKTLLGEPKPPQFRDLDAC*
created 11 Aug 97
Larry Parnell