| Gene | T10P11.8 |
| Putative Identification | hypothetical protein |
| Position | 52551 to 54555, from initial methionine to termination codon |
| Strand | - |
| EST match | none |
| Database match | A. thaliana hypothetical protein Y10986 |
Although T10P11.8 has no EST matches, it is similar to EST T04162. This sequence also shows weak similarity to mammalian clathrin assembly proteins; for example, to RatAP180 (residues 1 to 139) there is 30% identity/41% similarity to residues 1 to 155 of protein T10P11.8.
CDS: The table below lists the coordinates of the T10P11.8 exons and which algorithm selected the 3' or 5' termini (Gr = Grail, M = MZEF).
| Exon | Range | 3' | 5' |
|---|---|---|---|
| 1 | 53871 to 54555 | Gr | Gr |
| 2 | 52929 to 53792 | M,Gr | M,Gr |
| 3 | 52551 to 52837 | Gr | Gr |
Complete CDS of T10P11.8
ATGGGTTCAAGTAAGCTAAAACGTGCCATAGGAGCCGTGAAAGATCAAACAAGCGTAGGA TTAGCCAAAGTCGGTGGTCGAAGCAGTTCTTTAACGGAACTCGAAATAGCTGTCGTGAAA GCGACGCGACATGATGACTATCCAGCGGAGGACAAGTACATTAGAGAGATTTTATGCCTA ACTTCTTACTCACGCAATTACGTAAGCGCTTGTGTGGCAACTCTCTCGCGACGGCTCAAC AAGACCAAGAACTGGTCGGTTGCTCTCAAAACCTTGATTTTGATCCAACGGTTGCTAACA GATGGAGATAGAGCCTACGAGCAAGAGATCTTCTTCGCGACGAGACGAGGAACGAGATTG CTTAACATGTCTGATTTCAGAGATGCGAGTCAGTCTGATTCGTGGGATTACTCTGCTTTT GTTCGGACTTATGCTTTGTATTTGGATGAACGTCTTGATTACCGGATGCAAGGAAGACGA GGGAAAAAAAAAAGTGGTGGTGGTGGTGGCGGTGATGGTGATTCCGGCGAGGAAGATGAT CATCGAGGGACAAGCAACGATATTCGGTCGAAAGCTATTGTGGTTAAATCTAAACCAGTC GCAGAGATGAAAACAGAGAAAATCTTCAACAGAGTACAACATTTACAACAGCTTCTTGAT CGGTTCTTGGCTTGTCGTCCAACAGGTAATGCGAAGAACAACAGAGTGGTGATTGTGGCT ATGTATCCGATAGTAAAAGAGAGTTTTCAGTTATACTACAATATAACAGAGATCATGGGA GTATTAATAGAGCGATTCATGGAATTAGACATTCATGATTCCATCAAAGTCTATGAAATC TTCTGTCGAGTTTCTAAACAGTTTGACGAGTTAGATCCGTTTTACGGATGGTGTAAGAAC ATGGCAGTTGCAAGATCTTCAGAGTATCCAGAATTGGAAAAGATTACACAGAAGAAACTT GATCTCATGGATGAGTTTATAAGAGATAAATCAGCTTTAGCTGCACAAACAACAAAATCA TCATCAAAAAGGTCTAACAAATCTGAGGAGGAGGAGAGCAAAACAGAGTATATTCAAGAA AATCAAGAAGATTTAAACTCCATCAAAGCATTACCCGCACCGGAACAGAAAGAAGAAGAG GAAGAAGAAGAGAAAATGGAAACAAAGAAAGATGTTGAAGAAGTGGTTTCAAGACAAGAT CAAGAGGGTGATTTGCTGGATTTAACAGATGAAGCGGGTGTAACGGCAGGAACGGTTGGT GATAGTTTGGCGTTAGCGTTATTTGATGGTGTCGTTGGGACCGAGAGTGCGTCTGGACCG GGGTGGGAAGCGTTTAACGATAATTCGGCGGATTGGGAGACGGACTTGGTGAGATCGGCG ACAAGATTGTCGGGACAAAAGAGTGAGCTCGGAGGAGGATTTGATACTTTGTTGCTTGAT GGAATGTATCAGTACGGTGCGGTTAATGCTGCGGTTAAAACGTCTACGGCTTATGGAAGT AGTGGAAGTGCTAGTAGTGTGGCTTTTGGTTCTGCAGGAAGCCCAGCAGCCTCGATGTTG GCATTGCCAGCGCCGCCACCGACAGCCAATGGAAACAGAAATAGTCCGGTGATGGTGGAT CCATTCGCGGCGTCGCTAGAGGTAGCCCCACCAGCATACGTGCAAATGAATGATATGGAG AAAAAACAAAGATTGTTAATGGAAGAACAAATAATGTGGGATCAATACAACAGAAGTGGA AGACAAGGTCACATGAATTTCGGACAAAACCAACAACAACAATATTATCAGCTTCCATAC TCCATGGGACCTTACTCTTACACGCCTCGCTATTGA
Protein Translation:
MGSSKLKRAIGAVKDQTSVGLAKVGGRSSSLTELEIAVVKATRHDDYPAEDKYIREILCL TSYSRNYVSACVATLSRRLNKTKNWSVALKTLILIQRLLTDGDRAYEQEIFFATRRGTRL LNMSDFRDASQSDSWDYSAFVRTYALYLDERLDYRMQGRRGKKKSGGGGGGDGDSGEEDD HRGTSNDIRSKAIVVKSKPVAEMKTEKIFNRVQHLQQLLDRFLACRPTGNAKNNRVVIVA MYPIVKESFQLYYNITEIMGVLIERFMELDIHDSIKVYEIFCRVSKQFDELDPFYGWCKN MAVARSSEYPELEKITQKKLDLMDEFIRDKSALAAQTTKSSSKRSNKSEEEESKTEYIQE NQEDLNSIKALPAPEQKEEEEEEEKMETKKDVEEVVSRQDQEGDLLDLTDEAGVTAGTVG DSLALALFDGVVGTESASGPGWEAFNDNSADWETDLVRSATRLSGQKSELGGGFDTLLLD GMYQYGAVNAAVKTSTAYGSSGSASSVAFGSAGSPAASMLALPAPPPTANGNRNSPVMVD PFAASLEVAPPAYVQMNDMEKKQRLLMEEQIMWDQYNRSGRQGHMNFGQNQQQQYYQLPY SMGPYSYTPRY*
Alignment of T10P11.8 (top) and RatAP180 (bottom). Identities are highlighted in red, similarities in lavender.
1 MGSSKLKRAIGAVKDQTSVGLAKVGGRSSSLTELEIAVVKATRHDDYPAEDKYIREILCL 1 MSGQTLTDRIAAAQ............YSVTGSAVARAVCKATTHEVMGPKKKHLDYLIQA TSYSRNYVSACVATLSRRLNKTKNWSVALKTLILIQRLLTDGDRAYEQEIFFATRRGTRL TNETNVNIPQMADTLFERATNS.SWVVVFKALVTTHHLMVHGNERFIQ..YLASR..NTL LNMSDFRDASQSDSWDYSAFVRTYALYLDER.LDYR 155 FNLSNFLDKSGSHGYDMSTFIRRYSRYLNEKAFSYR 139
written 11 Aug 97
updated 22 Aug 97
Larry Parnell