| Gene | T13L16.15 |
| Putative Identification | hypothetical protein |
| Position | 68896 - 70071, from the initial methionine to the termination codon |
| Strand | - |
| EST match | none |
| Database match | A. thaliana hypothetical proteins encoded by BAC T19D16 and ESSA contig AtFCA8. |
CDS: The table below lists the coordinates of the single T13L16.15 exon and which exon predicting algorithms selected the given termini (Fe = FEXA, Fg = FGENEA, GS = GenScan, Gr = GRAIL).
Exon |
Range |
3' |
5' |
| 1 | 68896 to 70071 | Fe, Fg, GS, Gr | Gr |
note - GenScan, FEXA, and FGENEA select the beginning of the CDS at position 70080.
Complete CDS of T13L16.15
ATGTCAGATCTTCCACGGGATTTGTTAGCAGAGATTCTCAGTAGGGTTCCATTGGCATCT TTAAGATCAGTGCGGTTCACTTGCAAAAAATGGAACGATTTATCCAAAGATCGGAGCTTT CTCAAGAAACAAATCGTCGAAGCAAAGAAGAAGCAATTGAAATCGAAGGAGTTTGAGGTG ATCATGATGAGGAATTTTAGAGTTTATCTAACGAGCGTCGATCTCCACAACGATGTTAAT CCATCTTTTACGCCTAAAGGTACACTTACTAGCTTTAGCGATGATGCAAATCAGCATCAA GTCGATAATGTGTCTAGTGTCTTTCACTGCGATGGTTTACTCTTATGCATCACCAAAGAC CTCAACTTTAGGCTTGTGGTTTGGAACCCTTATTTTGGGCAAACAAGATGGATCCAACCC AGAAATTCTTACCACATAAAGGACATTTACGCTATTGGGTACGATGAGAATAAGAACCAC AAAATCCTGAGATTGAAGGATCAGTATTACGATTATGATTCACATCCACGGGCACGGATT TGTGAGTTTGAACTCTACAGTTTTGAGTCTAATTCATGGAAGGTTGTTCTTGATGTTAGT CCTGACTGGTATATACACTCTTATCACCGTGGCTTGTCTGTAAAGGGGAATACTTACTGG TATGCAACAGAGAAGCATGGCTATGTTAATTTCTTGATCTGTTTTGATTTCACAACTGAG AAATTTGGACCGCGTTTGCCTCTGCCTTTTAACGCTACCGAGTCTTTTACTTATGATGAT GTTGTTACTCTCTCTAGTGTTGGAGAAGAGCAGCTTGCGCTGTTGTTTCAGAGTGATGCT ACATTGATGATGGAGATTTGGGTTACGAGCAAGGTTGACCCCACAGAGGTTTTGTGGAAC AAATTGTTCTTAGCGGTTGATCATGATATGATAGAATTCGACTATGAGTTAAAGTTTGTG GCAGACGCTGGGAGTTTCTTCATTGACCAGAAGAAGAATGTTGTTGTGGTTTTTGATAAA GATATGAATGAGCATACCCATCGTGGCATGGCTTACATTGTTGGGAAGAACGGATACTTC AAAAGAGTGGATATTGGGGAAGAAGCATACACGAGTTGTTTCCCACTTGTCTGTTCTTAT GTTCCAAGCTCAGTGCAAATCAGGCAGCTAACCTGA
Protein sequence of T13L16.15
MSDLPRDLLAEILSRVPLASLRSVRFTCKKWNDLSKDRSFLKKQIVEAKKKQLKSKEFEV IMMRNFRVYLTSVDLHNDVNPSFTPKGTLTSFSDDANQHQVDNVSSVFHCDGLLLCITKD LNFRLVVWNPYFGQTRWIQPRNSYHIKDIYAIGYDENKNHKILRLKDQYYDYDSHPRARI CEFELYSFESNSWKVVLDVSPDWYIHSYHRGLSVKGNTYWYATEKHGYVNFLICFDFTTE KFGPRLPLPFNATESFTYDDVVTLSSVGEEQLALLFQSDATLMMEIWVTSKVDPTEVLWN KLFLAVDHDMIEFDYELKFVADAGSFFIDQKKNVVVVFDKDMNEHTHRGMAYIVGKNGYF KRVDIGEEAYTSCFPLVCSYVPSSVQIRQLT*
Multiple sequence analysis of T13L16.15 and similar hypothetical proteins. The alignment presented below compares five different Arabidopsis hypothetical proteins: T13L16.15, T19D16.19, AtFCA8, F19K23.19, and F5J6.7
1 60
T19D16.19 MFRRKSRSISPRRHRSRSVTPKRRSPTPKRYKRQKSRSSTPSPAKRSPAATLESAKNRNG
61 120
T19D16.19 EKLKREEEERKRRQREAELKLIEEETVKRVEEAIRKKVEESLQSEKIKMEILTLLEEGRK
121 180
T19D16.19 RLNEEVAAQLEEEKEASLIEAKEKEEREQQEKEERERIAEENLKRVEEAQRKEAMERQRK
AtFCA8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
T13L16.15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
F19K23.19 ~~~~MAKVDWCNERRKFWKITLFLSIAVMAISLLVFCKRGKPNNMEDSTEYAIIFTAKYL
F5J6.7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
181 240
T19D16.19 EEERYRELEELQRQKEEAMRRKKAEEEEERLKQMKLLGKNKSRPKLSFALSSKMTTMSDL
AtFCA8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~MSDL
T13L16.15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~MSDL
F19K23.19 IIQYAVFGASIKVEEMWGWMPSSSSPPPEECSPAERAWSELAFVVFICVMTLGLGKVVEV
F5J6.7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~MAL
241 300
T19D16.19 DEIMVAEILCRTPMTCLKTVRSVCKKWNALSKKWFFFGK...........A.KQFLGFMM
AtFCA8 SPDLVGEILTRVPMTSLISVRCTCKMWNALSKEGIFFKA...........ARKQFMGFTM
T13L16.15 PRDLLAEILSRVPLASLRSVRFTCKKWNDLSKDRSFLKKQIVEAKKK.QLKSKEFEVIMM
F19K23.19 FFFTMSSIIGLIAISHLFYPTPDHKFEMVMKHFWFIVGLGIIFTKMHFDKAEKQFLVLIL
F5J6.7 PWELEEDILSRLPPISLVRFRTVSKHWNSLFNDKTFINNHLSRSRP.........EFIIL
301 360
T19D16.19 MDSRVCSLRFDLR.......KDLVVEP..PSIKQVSILDQIE.VSKIFHSDGLLLCIIKN
AtFCA8 MDSRVCSMKFDLQG...IRNNEHDFVD..PCIKQIAKLDQIE.VSKVLQCDGLLLCV...
T13L16.15 RNFRVYLTSVDLHN...DVNPSFTPKGTLTSFSDDANQHQVDNVSSVFHCDGLLLCITKD
F19K23.19 RLYTVCSMSLDLRGLHDNIDPSIEVKGELSLIDPHCSSRKT.FVSKVFHCNGLLLCTTM.
F5J6.7 TNSKIYSVDIIDHN...NIDPTIRLHEIPTYDIHSRGTDLNRTIINT..CDEFLFYNYRY
361 420
T19D16.19 DTTRLLVWNPYLEQTRW................IQPRHNFHIL.........DCYAIGH.
AtFCA8 GQTRFIKPRKRFNKLEW............YALGYDNNHNYKIL.........MNYDTGHL
T13L16.15 LNFRLVVWNPYFGQTRWIQPRNSYHIKDIYAIGYDENKNHKILRLKDQYYDYDSHPRARI
F19K23.19 ..TGLVVWNPCTDQTRWIKTEVPHNRNDKYALGYG...NYK....SCYNYKIMKFLDLES
F5J6.7 WDNMTALWNPWLRQVRWIEYANQEFC..VFGLGYDNSRPEKVYKILGHLFCHGKVLRDQ.
421 480
T19D16.19 .......DKNRKHK..ILRFVDD.FLPV....ENVVFGGNTYFFAKERYIFEGKGPEEID
AtFCA8 FGYEIYDFSSDSWR..VLDVSPDCHIPF..HQQSVSLNGNTYFLAQEKIIVEGEEEEVVD
T13L16.15 CEFELYSFESNSWK.VVLDVSPDWYIHS..YHRGLSVKGNTYWYATEKHGY.........
F19K23.19 FDLEIYEVNSNSWR.VLGTVTPDFTIPL..DAEGVSLRGNSYWIASHKREEIEEEEEEEN
F5J6.7 .KVVIYECASDSLRFIDRPEDDDWPITETAKRSNVSLNGNLYWFGCSNYEND........
481 540
T19D16.19 ITETEDFLLCFDFTAERFGPRLPLPFHS....YYAETVTLSCVKEDQLSVLCQRQPSEPS
AtFCA8 ..EIEKFLLCFDFTTERFGPRLPLPFHS....DVLETVAISCVRDDQLAVLYQR.....F
T13L16.15 ....VNFLICFDFTTEKFGPRLPLPFNATESFTYDDVVTLSSVGEEQLALLFQ...SDAT
F19K23.19 EYFINDFLISFDFTTERFGPRVSLPFKCESSW...DTISLSCVREERLSLFFQ...DDGT
F5J6.7 ....EYYIRIFDFSTEDFKPFCLLPCQMSHS...TDELVLAVYKGDRFSLLKQ...CSVT
541 600
T19D16.19 EILEIWVSTNI...QPNAVSWS.IFLKVD...MRPLTGFQFNDMAGSFFIDQENKVAVVF
AtFCA8 ETWEIWVTTKI...DPTAVSWS.MFLSVD...MEPPTGCQFDDEAGSFFIDEENKVAVFF
T13L16.15 LMMEIWVTSKV...DPTEVLWNKLFLAVDHDMIEFDYELKFVADAGSFFIDQKKNVVVVF
F19K23.19 LKMEIWMTNNITETKTTTMSWSP.FLKIDLYT....YGHRFGNEV.SFLVDEENKVIVCC
F5J6.7 REIGVWVTKER...ISNDNGNGGEGVEWLKLMTLSKPNLPKLFGTVSYFIYGKTLYMCNG
601 660
T19D16.19 DLD..........PSQICRYQTAYIIGQEYGGYFNSVNIGEVPNLWIPGSVGYADTTSCI
AtFCA8 NSDLFNPR....VENRNRRYPTAYIIGQD..GYFKSATLREAPDLVKPDPYVY.....CC
T13L16.15 DKDM..........NEHTHRGMAYIVGKN..GYFKRVDIGE............EAYTSCF
F19K23.19 DEEEDDINDTVYIIGENEYWRKEDIVQRSYRPHIPS*~~~~~~~~~~~~~~~~~~~~~~~
F5J6.7 DDETALACIYIVREDVCKKFQIGSGNINCRHCVYTPNLLSLPLFIG*~~~~~~~~~~~~~
661 678
T19D16.19 PPVCSSYVPSLVQIG*~~~
AtFCA8 PLVWSSYAPSLVQL*~~~~
T13L16.15 PLVC.SYVPSSVQIRQLT*
F19K23.19 ~~~~~~~~~~~~~~~~~~~
F5J6.7 ~~~~~~~~~~~~~~~~~~~
written 25 Nov 97
Larry Parnell