A short repeat element of about 170 bp is found on T13L16 from position 15775 to 15949. This element is also found in AtFCA3 (ESSA-I contig 3) and BAC T17A5. All three of these clones originate from chromosome IV.

Alignment of the three sequences detailed in the above table

        1                                                         60
T13L16  ~GATAATCATGGAATTTTGATTACATCAATACGAACGGTCAAAATCAATCTCAATTATTT 
 T17A5  ~~~~~~TTAAAAAAGAGAGGGAGATTTACATAAAAACGACAAAATCAATCTCAACTATTT 
AtFCA3  GAGAATTCTAAAACGGTCGTGAAAGTAAGGAAAAACGACCAAAATCAATCCCAACTATTT 

        61                                                       120
T13L16  CTATGCGGTTTTTTCCTACCTAAATTTTGATTACATGCATTTATCAATCCGAACTCACA. 
 T17A5  TTACACGGTTTTTTCCAACCCAAATTCTAATCTCTTGCATTTATCAATCCGAACTCTCAT 
AtFCA3  TCATGTGGCTTTTCTCAATCC...CTATGACTTTTTGAATTAATCAATTCGAACTCACA. 

        121                                                      180
T13L16  .CAATTTTCAAATAATAAATCTGAGTTATGTAACCGTTAGCCAATTTCAACATATATTCA 
 T17A5  GTAATTTTCAAATAACAAACCTAAACGATATAACAGTTAACCAATGT.AAAATATAGCCA 
AtFCA3  .CAATTTTTAAATAGCAAACTTGAACTATATGACCGTTAACCAGTTTCAACATAGAACTC 

        181                                218
T13L16  TTATAAATTAATATTAATCGTTAGCCAATTAAATAA~~
 T17A5  TTATTAAATAATGTAATAAACTTGAATTATGTAACCGT
AtFCA3  GACTTTGTGATCGACGTGCGCATCAACAAT~~~~~~~~

written 22 Nov 97
Larry Parnell