| Gene | T13L16.2 |
| Putative Identification | hypothetical protein |
| Position | 3065 - 5225, from the initial methionine to the termination codon |
| Strand | + |
| EST match | none |
| Database match | C. elegans hypothetical 108.7 kd protein C14B1.5 |
CDS: The table below lists the coordinates of the exons for T13L16.2 and which exon predicting algorithms selected the given termini GS = GenScan, Gr = Grail, M = MZEF, NPG = NetPlantGene - selects splice sites only, not exons).
Exon |
Range |
5' |
3' |
| 1 | 3065 - 3215 | Gr | GS, Gr, NPG |
| 2 | 3392 - 3409 | M, NPG | M, NPG |
| 3 | 3483 - 4076 | GS, Gr, M, NPG | Gs, Gr, M, NPG |
| 4 | 4164 - 4249 | Gs, Gr, M, NPG | GS, Gr, M, NPG |
| 5 | 4342 - 4652 | GS, Gr, M, NPG | GS, M, NPG |
| 6 | 4758 - 4829 | M, NPG | Gr, M, NPG |
| 7 | 4916 - 5225 | GS, M, NPG | GS, Gr |
Complete CDS of T13L16.2
ATGGAAAACGATCCATTTCTCCGGCAGTACCAGCCGTCGGAGCTTAAGATCGCTTCGGAG TTTCTGACGAATTGGCTTCCTTTTTTATCTAAAGATCTATGCAAGGATTGTAATCACCTT CTCTCCAATCGAATCCGTTCTCTTGACCCAGGAGGCGAGAGAGTAGCAACACATTGTAGT AACAACACTGACAAAGTTGATGGAGAGTGTAAAACTGGTTCTTGTTCAGTGGTGGAAAAT ATGGGATCAGAAAGAGCTAGTAACAATGTGGATGATAATTATGATGAGAAGTCGGAAAAT GGCGAAGACTGTGATAATCATTCGTTAGGTAGTTGGAAGGGAAGTGAAATTGTATTTGGT TCCTTTCCTGAAGATTTTAGTAGTGTATTGCAATCTAGACCAGCTGTTGTTGAAACAGCA AGCCCTCGTATGCGTTGGGCTGATATGGCACAAGAGGATGAGTTCGATGAGGAGGAGGAG GAGGAGGAAGAGGAGAGGGATTCGAGTAGGAAAGGTTTTGATGCGAGTTCGATGAAGACT CCAGAGAAGCCTAAGTTGTCTAGAGATCAGAGAGAGAATCTCAGGCTGATTAATGTGAAG AGAAAGAAAGACTTTATTTGCTTGGAGAGAGTTAAGGGAAAGATTGTTAACGTGCTTGAT GGACTTGAGTTGCACACTGGTGTTTTTAGCGCAGTGGAGCAGAAACGGATTGTTGATCAA GTGTATCAACTTCAAGAGAAGGGACGAAGAGGAGAACTTAAAAAGCGTACATTTACTGCT CCACATAAGTGGATGAGAGGAAAAGGACGTGAGACTATACAATTTGGCTGTTGCTACAAC TACGCTCCAGACAGAGCTGGAAACCCACCGGGTATCCTTCAACGTGAAGAAGTGGATCCA CTACCTCATCTTTTCAAAGTAATCATTAGAAAGTTGATTAAATGGCATGTACTGCCTCCA ACTTGTGTGCCCGATAGCTGCATTGTGAACATCTATGATGAAGGTGACTGCATACCTCCT CACATCGACAACCACGACTTTCTCCGTCCCTTCTGTACCATCTCTTTCCTCAGTGAATGC GATATCCTCTTTGGCTCAAACCTGAAAGTTGAGGGTCCTGGTGACTTCTCGGGTTCATAC TCAATACCGCTTCCTGTGGGATCAGTTCTGGTGTTAAATGGAAATGGAGCTGATGTAGCT AAGCACTGTGTACCTGCAGTTCCTACAAAAAGGATATCAATTACATTTAGGAAAATGGAT GAGTCGAAACGCCCGGTTTGGTTCACCCCAGAGCCTGATTTGCAAGGGATTGAGCCATTG CCATTGGACCTGAACCGGTCTGGTTCTACTTCAAGGTTCTCAAGATTAAACAACCATAAC GGTACTAACCAAAGAGGACATGGACGTAGAGGAGGAGGCAATGGTTATGACTCAAGAGGT TACTATAATCCTGAGAGAAGCAGTGAACACAATGACTCTGGAGACTGGCCATCAAGCCAG AGAAGAGGAATGCCACGTCCTAGTAGAAGAAACTACGGTTAA
Notes regarding the CDS of T13L16.2: The start codon (position 3065 - 3067) is predicted solely by GRAIL. GenScan joins T13L16.1 and T13L16.2 as one gene, but the splice-acceptors (AG) of the two GenScan intergenic exons are not predicted by the other algorithms.
Protein sequence of T13L16.2
MENDPFLRQYQPSELKIASEFLTNWLPFLSKDLCKDCNHLLSNRIRSLDPGGERVATHCS NNTDKVDGECKTGSCSVVENMGSERASNNVDDNYDEKSENGEDCDNHSLGSWKGSEIVFG SFPEDFSSVLQSRPAVVETASPRMRWADMAQEDEFDEEEEEEEEERDSSRKGFDASSMKT PEKPKLSRDQRENLRLINVKRKKDFICLERVKGKIVNVLDGLELHTGVFSAVEQKRIVDQ VYQLQEKGRRGELKKRTFTAPHKWMRGKGRETIQFGCCYNYAPDRAGNPPGILQREEVDP LPHLFKVIIRKLIKWHVLPPTCVPDSCIVNIYDEGDCIPPHIDNHDFLRPFCTISFLSEC DILFGSNLKVEGPGDFSGSYSIPLPVGSVLVLNGNGADVAKHCVPAVPTKRISITFRKMD ESKRPVWFTPEPDLQGIEPLPLDLNRSGSTSRFSRLNNHNGTNQRGHGRRGGGNGYDSRG YYNPERSSEHNDSGDWPSSQRRGMPRPSRRNYG*
BLAST output indicating similarity between T13L16.2 and C. elegans hypothetical protein C14B1.5
sp|P49958|YKY5_CAEEL HYPOTHETICAL 108.7 KD PROTEIN C14B1.5 IN CHROMOSOME III gi|558272
(Z37139) C14B1.5 [Caenorhabditis elegans]
Length = 954
Score = 47.3 bits (110), Expect = 2e-04
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 268 KGRETIQFGCCYNYAPDRAGNPPGILQREEVDPLPHLFKVIIRKLIKWHVLPPTCVPDSC 327
K R + FG ++Y+ + A + +E DP+P + +I +LI + T PD
Sbjct: 533 KHRAVVHFGHVFDYSTNSAS------EWKEADPIPPVINSLIDRLISDKYI--TERPDQV 584
Query: 328 IVNIYDEGDCIPPHIDNHD-FLRPFCTISFLSE 359
N+Y+ G IP H D H F P +IS LS+
Sbjct: 585 TANVYESGHGIPSHYDTHSAFDDPIVSISLLSD 617
written 16 Dec 97
Larry Parnell