| Gene | T13L16.3 |
| Putative Identification | serine proteinase |
| Position | 13670 - 15241, from the initial methionine to the termination codon |
| Strand | + |
| EST match | none |
| Database match | T1B8.31, serine proteinase |
CDS: The table below lists the coordinates of the exons for T13L16.3 and which exon predicting algorithms selected the given termini (Fe = FEXA, Fg = FGENEA, GS = GenScan, Gr = Grail, M = MZEF, NPG = NetPlantGene - selects splice sites only, not exons).
Exon |
Range |
5' |
3' |
| 1 | 13670 - 14165 | Fe, Fg, GS, Gr | Fe, NPG |
| 2 | 14768 - 14856 | M, NPG | M, NPG |
| 3 | 14948 - 15241 | GS, NPG | GS, Gr |
Complete CDS of T13L16.3
ATGGAGCCGCCACAGCATCAGCATCATCATCATCAAGCCGACCAAGAAAGCGGCAACAAC AACAACAACAAGTCCGGCTCTGGTGGTTACACGTGTCGCCAGACCAGCACGAGGTGGACA CCGACGACGGAGCAAATCAAAATCCTCAAAGAACTTTACTACAACAATGCAATCCGGTCA CCAACAGCCGATCAGATCCAGAAGATCACTGCAAGGCTGAGACAGTTCGGAAAGATTGAG GGCAAGAACGTCTTTTACTGGTTCCAGAACCATAAGGCTCGTGAGCGTCAGAAGAAGAGA TTCAACGGAACAAACATGACCACACCATCTTCATCACCCAACTCGGTTATGATGGCGGCT AACGATCATTATCATCCTCTACTTCACCATCATCACGGTGTTCCCATGCAGAGACCTGCT AATTCCGTCAACGTTAAACTTAACCAAGACCATCATCTCTATCATCATAACAAGCCATAT CCCAGCTTCAATAACGGGAATTTAAATCATGCAAGCTCAGGTACTGAATGTGGTGTTGTT AATGCTTCTAATGGCTACATGAGTAGCCATGTCTATGGATCTATGGAACAAGACTGTTCT ATGAATTACAACAACGTAGGTGGAGGATGGGCAAACATGGATCATCATTACTCATCTGCA CCTTACAACTTCTTCGATAGAGCAAAGCCTCTGTTTGGTCTAGAAGGTCATCAAGAAGAA GAAGAATGTGGTGGCGATGCTTATCTGGAACATCGACGTACGCTTCCTCTCTTCCCTATG CACGGTGAAGATCACATCAACGGTGGTAGTGGTGCCATCTGGAAGTATGGCCAATCGGAA GTTCGCCCTTGCGCTTCTCTTGAGCTACGTCTGAACTAG
Protein sequence of T13L16.3
MEPPQHQHHHHQADQESGNNNNNKSGSGGYTCRQTSTRWTPTTEQIKILKELYYNNAIRS PTADQIQKITARLRQFGKIEGKNVFYWFQNHKARERQKKRFNGTNMTTPSSSPNSVMMAA NDHYHPLLHHHHGVPMQRPANSVNVKLNQDHHLYHHNKPYPSFNNGNLNHASSGTECGVV NASNGYMSSHVYGSMEQDCSMNYNNVGGGWANMDHHYSSAPYNFFDRAKPLFGLEGHQEE EECGGDAYLEHRRTLPLFPMHGEDHINGGSGAIWKYGQSEVRPCASLELRLN*
Alignment of T13L16.3, T1B8.31 (serine proteinase), and Arabidopsis homeobox gene AthB-8.
1 60
T13L16.3 ~~~~~~~~~~~~~~~MEPPQHQHHHHQADQESGNNNNNKSGSGGYTCR..QTSTRWTPTT
T1B8.31 MASSNRHWPSMFKSKPHPHQWQHDINSPLLPSASHRSSPFSSGCEVERSPEPKPRWNPKP
AthB-8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~MGGGSNNSHNMDNGKYVRYTP..
61 120
T13L16.3 EQIKILKELYYNNAIRSPTADQIQKITARLRQFGKIEGKNVFYWFQNHKARERQKKRF..
T1B8.31 EQIRIL.EAIFNSGMVNPPREEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRLLH
AthB-8 EQVEAL.ERLYND.CPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASR
121 180
T13L16.3 NGTNMTTPSSSPN.SVMMAANDHYHPLLHHHHGVPMQRPANSVNVKLN.QDHHLYHHNKP
T1B8.31 NHSKHSLPQTQPQPQPQPSASSSSSSSSSSSKSTKPRKSKNKNNTNLSLGGSQMMGMFPP
AthB-8 LQAVNRKLTAMNKLLMEENDRLQKQVSHLVYENSYFRQHPQNQGNLATTDTSCESVVTSG
181 240
T13L16.3 YPSFNNGNLNHASSGTECGVVNASNGYMSSHVYGSME..QDCS.MNYNNVGGGWANMDHH
T1B8.31 EPAFLFP..VSTVGGFEGITVSSQLGFLSGDMIEQQKPAPTCTGLLLSEIMNGSVSYGTH
AthB-8 QHHLTPQHQPRDASPAGLLSIADETLTEFISKATGTAVEWVQMPGMKPGPDSIGIVAISH
241 300
T13L16.3 YSSAPYNFFDRAKPLFGLEGHQEE....EECGGDAYLEHRRTLPLFPMHGEDHINGGSGA
T1B8.31 HQQHLSEKEVEEMRMKMLQQPQTQICYATTNHQIASYNNNNNNNNIMLHIPPTTSTATTI
AthB-8 GCTGIAARACGLVGLDPTRVAEILKDKPCWLRDCRSLDIVNVLSTANGGTLELIYMQLYA
301 360
T13L16.3 IWKYGQSEVRPCASLELRLN*~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
T1B8.31 TTSHSLATV.PSTSDQLQVQGNVNI*~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AthB-8 PTTLAPARDFWMLRYTSVMEDGSLVICERSLNNTQNGPSMPPSPHFVRAEILPSGYLIRP
361 420
AthB-8 CEGGGSILHIVDHFDLEPWSVPEVLRSLYESSTLLAQRTTMAALRYLRQISQEISQPNVT
421 480
AthB-8 GWGRRPAALRALSQRLSKGFNEAVNGFSDEGWSILESDGIDDVTLLVNSSPTKMMMTSSL
481 540
AthB-8 PFANGYTSMPSAVLCAKASMLLQNVPPSILLRFLREHRQEWADNSIDAYSAAAIKAGPCS
541 600
AthB-8 LPIPRPGSFGGQVILPLAHTIENEEFMEVIKLESLGHYQEDMMMPADIFLLQMCSGVDEN
601 660
AthB-8 AVESCAELIFAPIDASFSDDAPIIPSGFRIIPLDSKSEGLSPNRTLDLASALDVGSRTAG
661 720
AthB-8 DSCGSRGNSKSVMTIAFQLAFEMHMQENVASMARQYVRSVIASVQRVALALSPSSHQLSG
721 780
AthB-8 LRPPPASPEAHTLARWISHSYRCYLGVDLLKPHGTDLLKSLWHHPDAVMCCSLKALSPVF
781 840
AthB-8 TFANQAGLDMLETTLVALQDITLDKIFDNNNGKKTLSSEFPQIMQQGFMCMDGGICMSSM
841 874
AthB-8 GRAVTYEKAVGWKVLNDDEDPHCICFMFLNWSFI*
written 22 Nov 97
Larry Parnell