| Gene | T17A5.2.1 |
| Putative Identification | hypothetical protein |
| Position | 62122 to 63387, from the initial methionine to the termination codon |
| Strand | - |
| EST match | none |
| Database match | A.thaliana hypothetical protein F6P23.6 |
CDS: The table below lists the coordinates of the single T17A5.2.1 exon and which exon prediction algorithms selected the 3' and 5' termini (GF = Genefinder, GS = GenScan, Gr = Grail, M = MZEF).
| Exon | Range | 3' | 5' |
|---|---|---|---|
| 1 | 62122 to 63387 | GS | GS |
Complete CDS of T17A5.2.1
ATGGGTGATTGGTCAAAGCTACCAGAGGAGCTTCTTGGTTTAATTGCTCTCAGACTTTAC TCCGTCATCGAACTCATCCGTTTCCGGAGCATATGCAAGTCATGGCGCTCCTCTGCTTCC GGCGTCAACAAGAACCATTCCCTGAGCTCCCCTCTCATCTACTTCAAGCCGCTCCAAATC ATTCTCGCTCGCGCACAAGCAAACGGACAAATTTTGAGCAAGTATCATGGCACGGTCCTC TCACGTGCCACATTCTTTCGCGTCACACTCGCCTCCTCTCCGGACCAAGGGTGGTTGATC AAATCAGACACCGATCTCAAATACCGGAATTTCCATCTCCTAAACTGCCTCTCTCGCAAA GCACTAGGACGTTCTCGCAAGCTCATTTCTCTGTCGGAGTTCATAGTCTCCGAGATTCAA GAATCTTATGCGGTTGTAGGCCGCCGCACAAGAGAAACAGCTAGCGAATTCAAAAGAGTG TTTCTTGTCAGAGTCCAAGGAGGAGATCATCGTGTTCTAGTGATCGGCATCGACGGGAAA ATCAGGTTCTGGAAAGGAGGAATATGGAACGGAATCAAGAAACAAGTAGCTCAATTCTCT GACTTTGTACTTGACGAAGGTCTTACTTACGCTGTGGATACAAAAGGCATTATGTGGTGG ATTAGTTCCGCTTACGACATCATCAGGTACGGAACTAAACTACATGAAAACATCACTAAC GGTTCTTGCGGAGAAAAAAGGTTTGTAAGATGTCGTGGAGAACTTTACATTGTAGATCGT CTCATTGACGAGAATCTCCTAAAGAGAAAAGCTGATTCCTATGATGATAATGCCATTGTT CATTTCCGGAATGCTGATTATACCAATGCTGATCTCTGGGAAGATGGTAATGGCAATGAT GATTTCTTCGCTGCTCAGGCTCATCGCTTTATCCATGTGCTACACGACAATCTTGGGAAT GTAAGTTGTAAACCATTTGAACGTGACCCTCCCAAAACGATAGGTTTCAAGGTTTACAAG AATGATGAAGAACTGTTAAAATGGGTAGAAGTCAAGTCCTTGGGAGATAAGGCGATTGTG ATAGCTACCGATGCCTGTTTCTCGGTTTCGGCTCATGAGTTCTACGGATGCCTGCCAAAT TCTATTTACTTCACCGACAAAAAGGAAGAAGAGGTTAAGGTGTTCAAGCTAGATGATGGT AGTATCACAACAATGTCGGAATCTGAGCAGAGTTGTTTCCAAATGTTTGTCCCTAGCTTT CTCTAA
Protein sequence:
MGDWSKLPEELLGLIALRLYSVIELIRFRSICKSWRSSASGVNKNHSLSSPLIYFKPLQI ILARAQANGQILSKYHGTVLSRATFFRVTLASSPDQGWLIKSDTDLKYRNFHLLNCLSRK ALGRSRKLISLSEFIVSEIQESYAVVGRRTRETASEFKRVFLVRVQGGDHRVLVIGIDGK IRFWKGGIWNGIKKQVAQFSDFVLDEGLTYAVDTKGIMWWISSAYDIIRYGTKLHENITN GSCGEKRFVRCRGELYIVDRLIDENLLKRKADSYDDNAIVHFRNADYTNADLWEDGNGND DFFAAQAHRFIHVLHDNLGNVSCKPFERDPPKTIGFKVYKNDEELLKWVEVKSLGDKAIV IATDACFSVSAHEFYGCLPNSIYFTDKKEEEVKVFKLDDGSITTMSESEQSCFQMFVPSF L*
BLAST output demonstrating sequence conservation between T17A5.2.1 and F6P23.6.
Score = 79.2 bits (192), Expect = 1e-13
Identities = 101/405 (24%), Positives = 168/405 (40%), Gaps = 84/405 (20%)
Query 1 MGDWSKLPEELLGLIALRLYSVIELIRFRSICKSWRSSASGVNKNHSLSSPLI-----YF 55
M DWS LP++LL LI+ L S +LI+FRS+C SWRS+A + + P++
Sbjct 1 MVDWSTLPKDLLDLISKSLESSFDLIQFRSVCSSWRSAAEPKSPLPTHHLPILPDNGGSL 60
Query 56 KPLQIILARAQANGQILSKYHGTVLSRATFFRVTLASSPDQGWLIKSDTDLKY-RNFHLL 114
P + R +L K H + +F GWLIK + DL R LL
Sbjct 61 FPDSAVGFRLSQRSILLIKPHEPCIESDSF-----------GWLIKVEEDLNVPRKVTLL 109
Query 115 N--CLSRKALGRS-RKLISLSEFIVSEIQESYAV-----VGRRTRETASEFKRVFLVRVQ 166
+ C +R ++ + +++ +S+F V E+ + + VG E K V
Sbjct 110 DPLCDTRNSIPENFPRVLDMSKFKVRELGREFKLHYFNTVGDIVESLYLE-KAVVKYLDC 168
Query 167 GGDHR--VLVIGIDGKIRFWKG--GIWNGIKKQVAQFSDFVLDEGLTYAVDTKGIMWWIS 222
GD++ +L I + GK+ ++ W I + + D +L +G +AVD G
Sbjct 169 DGDYKFVLLTIHVSGKLAVFRSWDRAWTVINDMPSPYDDVMLFDGRFFAVDNNG------ 222
Query 223 SAYDIIRYGT-KLHENITNGSCGEKRF-VRCRGELYIVDRLIDENLLKRKADSYDDNAIV 280
++ Y + KL + G+K+F + GE+ +VD
Sbjct 223 -RTVVVDYSSLKLTLVASPVFGGDKKFLIESCGEMLLVDM-------------------- 261
Query 281 HFRNADYTNADLWEDGNGNDDFFAAQAHRFIHVLHDNLGNVSCKPFERDPPKTIGFKVYK 340
Y + + E G F+ + ++ P +T+ FKVY+
Sbjct 262 ------YLSLEAVEGDPG-----------FVEEIFEH-------PAFYMNERTVKFKVYR 297
Query 341 NDEELLKWVEVKSLGDKAIVIATDACFSVSAHEFYG-CLPNSIYF 384
E WV+V L DK + + D+ FS SA + C +S++F
Sbjct 298 FVEREESWVDVYDLEDKMLFLGDDSTFSASASDILPLCDGSSVFF 342
created 31 Oct 97
updated 3 Nov 97
Larry Parnell