| Gene | T17A5.2.2 |
| Putative Identification | hypothetical protein |
| Position | 66086 to 66955, from the initial methionine to the termination codon |
| Strand | - |
| EST match | none |
| Database match | A. thaliana hypothetical proteins F6P23.10 and F6P23.10.1 |
CDS: The table below lists the coordinates of the single T17A5.2.2 exon and which exon prediction algorithms selected the 3' and 5' termini (GF = Genefinder, GS = GenScan, Gr = Grail, M = MZEF).
| Exon | Range | 3' | 5' |
|---|---|---|---|
| 1 | 66086 to 66955 | GS,Gr | Gr - GS selects an initial Met at 66964 |
Complete CDS of T17A5.2.2
ATGATGATCAAGAACCATGTAAGATCTATAAGCTTACAATCAAGATCTCATCCTAGCACA GCAGCGATCGAGGAGTCGCTCGACAAATTTCTTATCACTATGAACACGTCGACAATGGCG TCGTCTGAGTCGGTTCACTCCGGTTTATCGGGGTTGGAGGATCTGTACGACTGTTCGGAA GATCTTCTGAAGATGGGTTCGACGCAAAGGGTGTTGTCGTTTAGTGATGAGAAGAAGAAG AAGAAGAGGAAAGTGAAGGGAGAGTTTATGGAGGAAATGCTTGATGGTTCGTTGAGGCTA ATGGATATATGCAACGTCTCGAGGGATCTCATGGTTGAGACTCATGAGCATGTTCTTGGT CTTCAGTCTTGTGTTAGGAGAAGGAAAGATGTCGACGTCTCGGGATATGTCGGGTTTAGG AAAAACATGAGGAAAGAAGTGAAGAAGCTTCTTGGATCTTTAAAGAACATTAATGTAGGG TTAGTGATGAGAGATCATGGTTATGATCAAGACGGTGATATTCATTTCTTGGCCGTGATT CATGCAATGAGACGTGTCGTTTATATGACAGTTTCGGTCTTAAAGTCTTTCTTTGAGTTC TTGTCGGGACGACAAAACGGGAACGACGTAAGGAGCAAGTTGGCTTTAGTTCTCATGAAC AAGAAGTTTCATGATCACGATAAGATGGTCAAAAACGAGTTGGAGAATGTAGATTCCGCG ATTTGTGGAGATTCTATCTCTCATGATGATCTTCATGAGAAGCTTGAGGAAGTTGAGGTA TGGATTGGAAAATTCGAGAAGAGTCTTGAAGGATTGTTTCGAGGGTTGATTAAAACACGA GCCTCGCTTCTCAACATAATCTCTCAATAG
Protein sequence:
MMIKNHVRSISLQSRSHPSTAAIEESLDKFLITMNTSTMASSESVHSGLSGLEDLYDCSE DLLKMGSTQRVLSFSDEKKKKKRKVKGEFMEEMLDGSLRLMDICNVSRDLMVETHEHVLG LQSCVRRRKDVDVSGYVGFRKNMRKEVKKLLGSLKNINVGLVMRDHGYDQDGDIHFLAVI HAMRRVVYMTVSVLKSFFEFLSGRQNGNDVRSKLALVLMNKKFHDHDKMVKNELENVDSA ICGDSISHDDLHEKLEEVEVWIGKFEKSLEGLFRGLIKTRASLLNIISQ*
Alignment of A. thaliana hypothetical proteins F6P23.10, F6P23.10.1, and T17A5.2.2.
1 60
F6P23.10 MAVSFHVRSHSYPSIPHPQAAHVDEQLARLRSSEETST.SSSSSICQRLDNLQELHESLD
F6P23.10.1 MAVSFHVRSNSFPSRSHPQAAHVDEQLARLRSSEQASS.SSSSSICQRLDNLQELHESLD
T17A5.2.2 MMIKNHVRSISLQSRSHPSTAAIEESLDKFLITMNTSTMASSESVHSGLSGLEDLYDCSE
61 120
F6P23.10 KLIRLPVTQQALGQEKNKKD.........VEQLLDGSLKILDVCNISKDALSQMKEGLME
F6P23.10.1 KLISRPVTQQALSQEHNKKA.........VEQLLDGSLRILDLCNISKDALSEMKEGLME
T17A5.2.2 DLLKMGSTQRVLSFSDEKKKKKRKVKGEFMEEMLDGSLRLMDICNVSRDLMVETHEHVLG
121 180
F6P23.10 IQSILRRKRG.DLSGEVKKYLASRKSFKK...TFQKVQKSLKAAQAEDNKDKSLAVFGEA
F6P23.10.1 IQSILRRKRG.DLSEEVKKYLTSRKSLKK...SFQKVQKSLKVTQAEDNNDDTLAVFGEA
T17A5.2.2 LQSCVRRRKDVDVSGYVGFRKNMRKEVKKLLGSLKNINVGLVMRDHGYDQDGDIHFLAVI
181 240
F6P23.10 EA......VTIAMFDSLFSYMSGSKTCS..KWSVVSKLMNKKKITCEAQ.ENEFTKVDSE
F6P23.10.1 EA......ITLSLFDSLLSYMSGSKTCS..KWSVVSKLMNKKKVTCEAQ.ENEFTKVDSE
T17A5.2.2 HAMRRVVYMTVSVLKSFFEFLSGRQNGNDVRSKLALVLMNKKFHDHDKMVKNELENVDSA
241 290
F6P23.10 FQSEKTLK...MEDVQILESCIQDFEDGLESLSKSLIKYRVSILNSFGH*
F6P23.10.1 FQSEKTLK...MDDVQNLESCIQDLEDGLESLSKSLIKYRVSFLNILGH*
T17A5.2.2 ICGDSISHDDLHEKLEEVEVWIGKFEKSLEGLFRGLIKTRASLLNIISQ*
created 3 Nov 97
Larry Parnell