| Gene | T2H3.12/T10M13.22 |
| Putative Identification | zinc-finger protein |
| Position | 37726 - 39984, from the initial methionine to the termination codon |
| Strand | - |
| EST match | none |
| Database match | RP8 sequences of rat, mouse, and human |
Note: This region was annotated using sequence from the overlapping clone T2H3. Although the entire gene model is encoded by T10M13, the sequence of T2H3, which is 100.0% identical to T10M13, is interior to that clone and thus avoids gene modeling problems that can occur at the very end of a sequence.
CDS: The table below lists the coordinates of the T2H3.12 exons and which algorithm selected the particular termini (GF = GeneFinder, GS = GenScan, Gr = GRAIL, M = MZEF, NPG = NetPlantGene - selects splice sites only, not exons). Note: GRAIL, MZEF and NetPlantGene all suggest an exon in the region of exon 1 (see table below), but no initial methionine is described for T2H3.12.
| Exon | Range | 3' | 5' |
|---|---|---|---|
| 1 | 39664 - 39984 | GF, GS, Gr, M, NPG | GF |
| 2 | 39482 - 39565 | GF, GS, M, NPG | GF, M |
| 3 | 39265 - 39398 | GF, Gr, M, NPG | GF, Gr, M |
| 4 | 39068 - 39165 | GF, GS, M, NPG | GF, GS, M |
| 5 | 38893 - 38981 | GF, GS, Gr, NPG | GF, GS, Gr |
| 6 | 38685 - 38799 | GF, GS, M, NPG | GF, GS, Gr, M |
| 7 | 38454 - 38608 | GF, GS, Gr, M, NPG | GF, GS, M |
| 8 | 38304 - 38374 | GF, M, NPG | GF, GS, M |
| 9 | 38103 - 38217 | GF, M, NPG | GF, M |
| 10 | 37726 - 37884 | GF, GS, Gr | GF, GS, Gr |
Alternate exons not used in building the gene model. GenScan predicts an initial exon from 40387 to 40361; and internal exons from 40343 to 40195, from 39600 to 39482, from 39664 to 39934 and from 38374 to 38201. GRAIL predicts internal exons from 40529 to 40467, from 39664 to 39934, from 38799 to 38710 and from 38634 to 38454. MZEF predicts an internal exons from 40467 to 40537, from 40246 to 40190 and from 39664 to 39934. NetPlantGene predicts several putative splice sites in this region. Those not used include splice donors at 40501 (confidence score = 1.00), at 40467 and at 40190 (0.93) and a splice acceptor at 39934.
CDS of T2H3.12
ATGAAACAGAGTAAAACCCTAGAATTCAATTCCTTTGCTCTGTTATGCAGCAGTCTTCAT TTCATCAAATTCAACACAGAAGATTCGATGAGTAGCTTCAACGGAGACTCCATGGATGAT TTCAAAGGCCTCCGAATAACTCAGCTTGATGATGATGACGATGATGAAACTGCGGTGGAA CCTATAAATATGGATGAATTTGATGATGATGATGAGGAAGATGATGAAGATTATGAACCT GTGATGTTAGGTTTCGTTGAGAGTCCTAAATTCGCATGGTCAAATCTTCGTCAACTGTTC CCTAATTTAGCTGGTGGTGTTCCGGCATGGTTGGATCCAGTTAATTTACCATCAGGGAAG TCAATTCTATGTGATCTATGTGAAGAACCTATGCAATTTGTACTTCAACTTTATGCTCCT TTAACAGACAAGGAATCAGCTTTTCATCGGACATTGTTTCTCTTCATGTGTCCATCTATG TCTTGTCTCCTTCGTGATCAACATGAACAATGGAAACGTGCCCCAGAGAAGGCTATGCGG AGTACGAAGGTTTTCCGTTGCCAATTGCCTCGAGCTAATCCTTTTTACTCGAGTGAGGCT CCAAAGCACGATGGAACAGACAAGCCATTGGGTCATGGAGCTCCGCTTTGCACTTGGTGT GGAACATGGAAAGGAGATAAACTATGTAGCGGCTGCAAAAATGCTCGATACTGTTCACCG AAACACCAGGCCCTGCATTGGCGCTTGGGTCATAAAACCGAATGCCAACAGCTTCGAACG GTTAGCGAAACATCTGACTCAGGCCCTGTCAATAATGGGGTTGCTCCAACTGAAAAGCAG AAAGTTGCGAGTAAGAGTTTATGGAAAGAATTTGTATTGATCAATGAGGATGAAAGTGAG TATGATACTGAGATGTCAGGAGATGATGAAGTAGCTAAACCTTTGGTCTCAAAGAGAGAA GTTGACGACCAAATGAAATCGCTAATGAACGATTTTGAGGGAGATGCTGATAAAAAGAAT TGGGTTAATTTCCAGCAACGCGTAGACAAAGCCCCTGAACAAGTTCTGAGATATTCCCGG AGCTCTGGTGCTAAACCCCTTTGGCCAATAGCAAGCGGACGAGTCTCTAAATCTGAGCTT CCCAGTTGCAAATCTTGTGGTGGTCCTCGTTGTTTTGAATTTCAGGTGATGCCGCAGCTA CTGTTCTTCTTCGGTGGGAAGAACGAGAGGGAATCTCTCGATTGGGCAACAATCGTGGTG TACACTTGTGAGAACTCGTGTGACTCGAGCTTAAGTTACAAGGAAGAGTTTGTCTGGGTT CAACTATACAGTCAGACAACTTAG
Protein sequence
MKQSKTLEFNSFALLCSLHFIKFNTEDSMSSFNGDSMDDFKGLRITQLDDDDDDETAVEP INMDEFDDDDEEDDEDYEPVMLGFVESPKFAWSNLRQLFPNLAGGVPAWLDPVNLPSGKS ILCDLCEEPMQFVLQLYAPLTDKESAFHRTLFLFMCPSMSCLLRDQHEQWKRAPEKAMRS TKVFRCQLPRANPFYSSEAPKHDGTDKPLGHGAPLCTWCGTWKGDKLCSGCKNARYCSPK HQALHWRLGHKTECQQLRTVSETSDSGPVNNGVAPTEKQKVASKSLWKEFVLINEDESEY DTEMSGDDEVAKPLVSKREVDDQMKSLMNDFEGDADKKNWVNFQQRVDKAPEQVLRYSRS SGAKPLWPIASGRVSKSELPSCKSCGGPRCFEFQVMPQLLFFFGGKNERESLDWATIVVY TCENSCDSSLSYKEEFVWVQLYSQTT*
For more information on T2H3.12/T10M13.22, please go to the annotation page T10M13.22.
written 11 Sep 98
updated 16 Sep 98
Larry
Parnell