| Gene | T2H3.2 identical to T10M13.21, within the overlap region of T2H3 and T10M13 |
| Putative Identification | hypothetical protein |
| Position | 40762 to 42308, from the initial methionine to the termination codon |
| Strand | + |
| EST match | none |
| Database match | --- |
CDS: The table below lists the exon coordinates for T10M13.21 and which gene prediction programs selected the 5' or 3' termini for the exons (GS = GenScan, Gr = GRAIL, M = MZEF, NPG = NetPlantGene - selects splice sites only, not exons).
| Exon | Range | 5' | 3' |
|---|---|---|---|
| 1 | 40762 - 41040 | Gr | GS, M, NPG |
| 2 | 41122 - 41215 | GS, NPG | GS, M, NPG |
| 3 | 41323 - 41741 | GS, Gr, M, NPG | GS, M, NPG |
| 4 | 41832 - 42308 | GS, Gr, NPG | GS, Gr |
Alternate exons not used in building the gene model.GenScan predicts an initial exon from 40711 to 41040. GRAIL predicts an initial exon from 40762 to 41056 and exon 3 from 41323 to 41720. MZEF predicts exon 1 from 40967 to 41040 and exon 2 from 41195 to 41215. NetPlantGene predicts many putative splice sites in this region, notably a splice donor at 41720 (confidence score = 0.90) and a splice acceptor at 40686 (1.00).
Complete CDS of T2H3.2
ATGGATCAGTATTTCATCGAGCTTATGGTGGAACAAGTTAGAAAAGGCAACAGATTTGAA GATCATTTGTTTAGTAAACGAGCTTGGAAGTTCATGTCTTGTTCCTTCACTGCCAAGTTC AAGTTTCTTTATGGCAAAGATGTTTTGAAAAACAGGCATAAGACATTGAGGAACTTGTTT AAATCTGTGAATAATCTTTTGATAGAAGATGGTTTTAGTTGGGATGATACTAGACAGATG GTTGTTGCTGATAACTGCGTTTGGGATGAGTATCTTAAGATTCATCCTGATTCGAGATCT TTTCGGATAAAGTCTATACCTTGTTACAAAGATCTGTGCTTGGTTTACTCAGATGGAATG TCTGAGCACAAAGCTGAGGAGAGTATTAGTGAGGGAGAATCCAAGACACTGATTCAGGAA GATGATGGGTACAACAGAATATGTGAATCGTCAACAGTCAGGTCTAACTCAAAAGGAAGC AGTGTCACACGGTGCAGGACTACTTGGCATCCTCCAATGGACCGGTATTTCATTGATCTG ATGTTGGACCAAGCGAGGAGAGGAAACCAGATTGAAGGTGTTTTCAGGAAACAAGCATGG ACTGAGATGGTTAATCTCTTCAATGCGAAATTTGAGTCTAACTTTGATGTTGATGTGTTG AAGAACCGGTATAAGTCTCTGAGAAGACAGTTCAACGCGATCAAGAGTATTCTTCGATCA GATGGGTTTGCTTGGGATAATGAGCGTCAAATGGTTACAGCTGATAATAATGTATGGCAA GACTATATAAAGGCTCATAGAGATGCAAGGCAATTTATGACTCGGCCAATTCCGTACTAT AAAGATCTGTGTGTGCTCTGTGGCGATTCTGGGATCGAAGAAAACGAATGCTTTGTAGCT ATGGATTGGTTTGACCCTGAAACTGAATTCCAAGAATTTAAGTCCAGTGGTACTACAGAT TTGTCTATTTCAGCTGAGGAAGAAGATAGCAACTCTCTTTTGTTTGACCCCAAGAACAAA AGAGATCAACTTGCTAATACTGATACAAGCCCTATAAACCCGAAAAAGCCTCGAGTTGAT GAAACCCAAACCATGTCAATAGAGGACACGGTTGAGGCTATTCAAGCGTTACCAGACATG GACGATGAACTTATATTGGATGCTTGTGATCTGCTTGAAGATAAACTCAAGGCGAAAACT TTCTTGGCTCTAGATGTGAAACTACGCAAGAAGTGGTTGTTAAGGAAACTCCGACCTCAA GTGACTTGA
Protein translation
MDQYFIELMVEQVRKGNRFEDHLFSKRAWKFMSCSFTAKFKFLYGKDVLKNRHKTLRNLF KSVNNLLIEDGFSWDDTRQMVVADNCVWDEYLKIHPDSRSFRIKSIPCYKDLCLVYSDGM SEHKAEESISEGESKTLIQEDDGYNRICESSTVRSNSKGSSVTRCRTTWHPPMDRYFIDL MLDQARRGNQIEGVFRKQAWTEMVNLFNAKFESNFDVDVLKNRYKSLRRQFNAIKSILRS DGFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRPIPYYKDLCVLCGDSGIEENECFVA MDWFDPETEFQEFKSSGTTDLSISAEEEDSNSLLFDPKNKRDQLANTDTSPINPKKPRVD ETQTMSIEDTVEAIQALPDMDDELILDACDLLEDKLKAKTFLALDVKLRKKWLLRKLRPQ VT*
written 12 Aug 98
Larry
Parnell