| Gene | T2H3.5 |
| Putative Identification | endo-1,4-beta glucanase |
| Position | 11503 to 13974, from the initial methionine to the termination codon |
| Strand | + |
| EST hits | T43127, T04837, T44100, AA721861 and AA395053 |
| Database match | plant endo-1,4-beta glucanses |
CDS: The table below lists the coordinates of the T2H3.5 exons and which gene modeling algorithms selected the 5' and 3' termini (GS = GenScan, Gr = GRAIL, M = MZEF, NPG = NetPlantGene - selects splice sites only, not exons).
| Exon | Range | 5' | 3' |
|---|---|---|---|
| 1 | 11503 - 11781 | Gr | Gr, M, NPG |
| 2 | 12156 - 12563 | Gr, M, NPG | EST, Gr, M, NPG |
| 3 | 12645 - 12737 | EST, GS, M, NPG | EST, GS, M, NPG |
| 4 | 12838 - 12999 | EST, GS, Gr, M, NPG | GS, Gr, M, NPG |
| 5 | 13074 - 13185 | GS, M, NPG | EST, GS, Gr, NPG |
| 6 | 13383 - 13546 | EST, GS, Gr, M, NPG | EST, GS, Gr, M, NPG |
| 7 | 13642 - 13974 | EST, GS, Gr, NPG | GS, Gr |
Alternate exons not used in building the gene model: GenScan predicts an initial exon from 12231 to 12539. GRAIL predicts exon 5 from 13089 to 13185. MZEF predicts exon 5 from 13074 to 13236. NetPlantGene predicts several splice sites in the region of this gene. Notable splice sites include a splice acceptor at 14053 (confidence score = 0.94) and a splice donor at 13963 (0.95).
Complete CDS of T2H3.5
ATGGCTCTTCTTCTAGTTTCTTCTTCCTCCTCCTATGCCCTCAGAGTCACCATTTTCTTG TCTTTCTTCTTCTTTCTCTGCAATGGCTTCTCTTACCCTACTACTTCTTCTCTTTTCAAC ACCCATCACCATCGTCACCACTTGGCCAAGCACAACTACAAAGATGCTCTCACTAAATCA ATCCTCTTCTTTGAAGGCCAAAGGTCAGGGAAACTTCCTTCTAACCAGAGAATGAGTTGG AGAAGAGACTCTGGTCTCTCTGATGGCTCTGCTCTTCATGTGGATTTGGTTGGAGGGTAC TATGATGCAGGAGACAATATCAAATTTGGTTTCCCAATGGCATTCACAACCACAATGCTT TCATGGAGTGTAATTGAATTCGGTGGACTCATGAAATCTGAATTACAAAACGCTAAAATA GCGATTCGTTGGGCTACTGATTATCTCCTCAAAGCCACTTCACAACCTGACACAATCTAT GTTCAAGTTGGTGATGCTAATAAAGACCATTCTTGTTGGGAAAGACCTGAAGACATGGAT ACTGTAAGAAGTGTGTTTAAAGTTGACAAGAACATTCCTGGTTCTGATGTCGCCGCTGAA ACCGCCGCTGCTCTAGCCGCCGCCGCCATTGTATTCAGAAAATCTGATCCTTCTTACTCC AAAGTCCTCCTCAAACGAGCCATCAGTGTTTTTGCATTTGCGGACAAATACAGAGGAACT TATAGTGCAGGATTAAAACCTGATGTTTGTCCATTTTATTGCTCTTACTCTGGTTATCAG GATGAATTGTTGTGGGGAGCTGCTTGGTTACAAAAAGCGACAAAGAATATAAAATATTTG AATTACATAAAAATCAATGGACAAATCCTTGGAGCTGCTGAATATGATAACACTTTTGGT TGGGATAACAAGCACGCTGGTGCCAGAATCCTTCTTACTAAGGCATTTTTGGTTCAGAAT GTGAAGACACTTCATGAATACAAAGGTCATGCTGATAATTTCATCTGCTCTGTTATTCCT GGAGCTCCTTTCTCTTCTACTCAGTATACACCAGGTGGATTATTGTTTAAAATGGCAGAC GCCAACATGCAATACGTGACGTCAACATCGTTCTTGCTCTTAACCTATGCCAAATACTTA ACCTCCGCCAAAACCGTCGTCCATTGCGGTGGCTCCGTCTACACTCCCGGTCGTCTTCGC TCCATCGCCAAAAGACAGGTGGATTATCTTCTTGGAGACAACCCATTAAGAATGTCTTAC ATGGTTGGTTACGGTCCAAAATTCCCACGGAGAATCCACCACCGTGGCTCCTCATTACCT TGTGTTGCAAGCCACCCGGCCAAGATCCAATGCCACCAAGGATTTGCAATCATGAACTCT CAATCTCCAAACCCTAACTTCCTTGTTGGTGCAGTCGTTGGTGGTCCGGACCAGCATGAT CGCTTCCCAGACGAACGGTCTGATTACGAGCAGTCCGAGCCGGCTACTTACATCAATTCA CCACTCGTTGGAGCTCTTGCCTACTTCGCCCACGCCTATGGTCAACTCTAG
Protein translation of T2H3.5
MALLLVSSSSSYALRVTIFLSFFFFLCNGFSYPTTSSLFNTHHHRHHLAKHNYKDALTKS ILFFEGQRSGKLPSNQRMSWRRDSGLSDGSALHVDLVGGYYDAGDNIKFGFPMAFTTTML SWSVIEFGGLMKSELQNAKIAIRWATDYLLKATSQPDTIYVQVGDANKDHSCWERPEDMD TVRSVFKVDKNIPGSDVAAETAAALAAAAIVFRKSDPSYSKVLLKRAISVFAFADKYRGT YSAGLKPDVCPFYCSYSGYQDELLWGAAWLQKATKNIKYLNYIKINGQILGAAEYDNTFG WDNKHAGARILLTKAFLVQNVKTLHEYKGHADNFICSVIPGAPFSSTQYTPGGLLFKMAD ANMQYVTSTSFLLLTYAKYLTSAKTVVHCGGSVYTPGRLRSIAKRQVDYLLGDNPLRMSY MVGYGPKFPRRIHHRGSSLPCVASHPAKIQCHQGFAIMNSQSPNPNFLVGAVVGGPDQHD RFPDERSDYEQSEPATYINSPLVGALAYFAHAYGQL*
written 13 Aug 98
Larry
Parnell