The region of T32N15 from position 8575 to 10041 contains a
long inverted repeat and a long direct repeat. Copy A of the
direct repeat resides between both copies of the inverted repeat.
Sequences and coordinates are shown below.
Inverted repeat:
. . . . .
8575 tttatactttctacatcatttttt.caactgcaggtggaatctttaaaac 8623
|||||||||| | ||||||||||| |||| |||||||||||| ||||
9775 tttatactttattcatcattttttataacttcaggtggaatctgcgaaac 9726
. . . . .
8624 gtatattcgtaatacacccagacatagcactagagttcaaagcaaagaac 8673
|||||||| || |||| ||||||| ||||| |||||| ||||||||||
9725 ttatattcgaaagacactcagacatggcactggagttccgagcaaagaac 9676
. .
8674 caacatatgaggacatcatgcataaat 8700
||| || ||||||||||||| || |||
9675 caatatgtgaggacatcatgtatgaat 9649
Direct repeat:
. . . . .
8872 aaacagtttggatctttataaaaaatgttacctgtgaaggaagaacctga 8921
||| |||||| |||||| | || |||||| |||||||||||||| ||
9789 aaagagtttgaatcttt.gagaacttgttacttgtgaaggaagaactaga 9837
. . . . .
8922 aacacattgacatcaaagctttcaccatcatcatttagccttatcctttt 8971
||| |||||||||| | | | || | | |
9838 aacccattgacatcgactgatgaagtttccttgtgca............. 9874
. . . . .
8972 cgaggttgagtattttcagaaacatctaatttgccaataacctgaagaac 9021
| | || |||||||||||||| ||||||||||| ||||||||
9875 .aatgactagacacctcagaaacatctaagttgccaataacttgaagaac 9923
. . . . .
9022 atctacctctgcaataatcttgacttcattgttcacaagaaatccacctt 9071
||| ||||| ||| ||| ||||||||||| |||||||||||||||||||
9924 atcaacctccacaacaattttgacttcatttttcacaagaaatccacctt 9973
. . . . .
9072 ctttggcattaagttcggaaaggagtagcatttcttctaacccatgacaa 9121
| || ||||||||| || ||| | ||||||||| |||||||| |
9974 ttctgacattaagtttggcaagagaaatcatttcttcatacccatgaaca 10023
.
9122 gagagtttttcctcgaac 9139
| | ||||| ||||||
10024 ggaatcttttcatcgaac 10041
Exons: Both Grail and MZEF predict exons on the negative strand in this region.
Exons predicted by MZEF
9477 to 9741
9819 to 10293
Assembly of these two exons into a polypeptide shows moderately
weak similarity to EST F14401 (60% identical/73% identical over
38 amino acids).
Exons predicted by Grail
9013 to 9156
9446 to 9741
9819 to 10054
Assembly of these exons into a polypeptide has no significant
match to sequences in the database.
written 25 Aug 97
updated 3 Sep 97
Larry Parnell