Comparison between T32N15 and T10M13
BAC T10M13 (AF001308) originates from the short arm of chromosome IV. The region of this BAC from 3438 to 7857 resides between genes T10M13.1 and T10M13.2. This region can be divided into four segments that have marked similarity to four segments of chromosome V BAC T32N15 between position 56734 and 60354.
Segment T32N15 T10M13 % identity A 56734 to 56813 7780 to 7857 94 B 56868 to 57284 6035 to 6432 90 C 58633 to 59256 5327 to 5989 85 D 59261 to 60354 3438 to 4666 93 ------------------------------------------------------------------------------------- Schematic of the two BACs showing areas of similarity and areas where an insertion disrupted that similarity:
54 bp \ / | - size of insert disrupting two neighboring segments of similarity Segments A and B of T32N15 can be joined, but are disrupted in T10M13 by a 1.3 kb insertion. An insertion of 1.4 kb into T32N15 disrupts the joining of segments B and C in T10M13. Segments C and D can be joined in T32N15, but separated by 661 bp in T10M13. The insertions over 1 kb in size may also be indicative of other transposable elements. ------------------------------------------------------------------------------------- Alignment of the regions similar between T32N15 and T10M13 showing a consensus or "ancestral" sequence:
56721.tATgtagAAaCCaAAACATCACAACTTTTTTTtcCCTCCAATTTCAtAA 56769 T32N15
7870 .aATtagaAAtCCgAAACATCACAACTTTTTTT..CCTCCAATTTCAaAA 7824 T10M13
consensus.-AT----AA-CC-AAACATCACAACTTTTTTT--CCTCCAATTTCA-AA
56770 TTCCTTAAAAATCGAGATCACTACACTTGaAtaAGAgAGTATAAaAgGCa 56819
7823 TTCCTTAAAAATCGAGATCACTACACTTGgAagAGAcAGTATAAgAaGCt 7774
consensus TTCCTTAAAAATCGAGATCACTACACTTG-A--AGA-AGTATAA-A-GC-
56820 gcatgaacgacctatataaaccacatgttaaGttgTtaActacAaAttAACTTTAGCAAAgATaCTAGATtGTT 56893
7773 aata.....(1320 bp removed)....tGaaaTagAgggaAtAcaAACTTTAGCAAAtATtCTAGATgGTT 6407
consensus -------------------------------G---T--A----A-A--AACTTTAGCAAA-AT-CTAGAT-GTT
56894 AGTAATCAGAATtATCAAACATT.AAATATACTcaTTGATGATTAGGATT 56942
6406 AGTAATCAGAATcATCAAACATTaAAATATACTatTTGATGATTAGGATT 6357
consensus AGTAATCAGAAT-ATCAAACATT-AAATATACT--TTGATGATTAGGATT
56943 TGAAGAcTtcatatgtttattttaaaggataAAtaAATTcaGtaAAATAA 56992
6356 TGAAGAaT.......................AAatAATTtcGgtAAATAA 6330
consensus TGAAGA-T-----------------------AA--AATT--G--AAATAA
56993 TTTTGTGTCaACATGTTTCAgTTTTGAATAATAgTATTTT.ATTTtcTTA 57041
6329 TTTTGTGTCcACATGTTTCAcTTTTGAATAATAaTATTTTaATTTatTTA 6280
consensus TTTTGTGTC-ACATGTTTCA-TTTTGAATAATA-TATTTT-ATTT--TTA
57042 AcGATAATGTGATCaTGtTTACAcAAcAGATGTcTTTGTAATTTGCTTTT 57091
6279 AtGATAATGTGATCgTG.TTACAtAAaAGATGTaTTTGTAATTTGCTTTT 6231
consensus A-GATAATGTGATC-TG-TTACA-AA-AGATGT-TTTGTAATTTGCTTTT
57092 atCTTAgTtTTTTTTTgtgTG...TTTTTTGGCATGtTtTAcTTcAATAT 57138
6230 tcCTTAaTaTTTTTTTtgtTGttcTTTTTTGGCATGcTaTAaTTtAATAT 6181
consensus --CTTA-T-TTTTTTT---TG---TTTTTTGGCATG-T-TA-TT-AATAT
57139 TTAACAAATTTTACATGTAACGCTTATGACGTGGCCACATTCACTAATCA 57188
6180 TTAACAAATTTTACATGTAACGCTTATGACGTGGCCACATTCACTAATCA 6131
consensus TTAACAAATTTTACATGTAACGCTTATGACGTGGCCACATTCACTAATCA
57189 CAACACGCAAAAATCAAAACATTTGTTcCTAAAACGTAATGTAGCCGTTA 57238
6130 CAACACGCAAAAATCAAAACATTTGTTtCTAAAACGTAATGTAGCCGTTA 6081
consensus CAACACGCAAAAATCAAAACATTTGTT-CTAAAACGTAATGTAGCCGTTA
57239 TTgGCaTTGGCGAgAACGTTAGaAATGTGCCACGTGGCtTATATAAtgtc 57288 T32N15
6080 TTaGCgTTGGCGAcAACGTTAGgAATGTGCCACGTGGCgTATATAAgcgt 6031 T10M13
consensus TT-GC-TTGGCGA-AACGTTAG-AATGTGCCACGTGGC-TATATAA----
57289 AgtAAAaaa..(1325 bp removed)..aacggAAAccgGGTTTctATTATTCTCTTTCTCTGCGACT 58661
6030 AtcAAAttccctgagatttctattataatgccaaaAAAaaaGGTTTtcATTATTCTCTTTCTCTGCGACT 5961
consensus A--AAA-----------------------------AAA---GGTTT--ATTATTCTCTTTCTCTGCGACT
58662 CTTTcATCGGCGATTTTGAAaTTTGCTCTGTAAaTTTTCGTTCgAAtTCT 58711
5960 CTTTgATCGGCGATTTTGAAtTTTGCTCTGTAAgTTTTCGTTC.AAaTCT 5912
consensus CTTT-ATCGGCGATTTTGAA-TTTGCTCTGTAA-TTTTCGTTC-AA-TCT
58712 TCaGTTTCATCTGGgTTaATCcTGttTTcgtaT....aTataatttTgcT 58757
5911 TCgGTTTCATCTGGaTTtATCaTGacTTatcgTtctctTcagtcagTaaT 5862
consensus TC-GTTTCATCTGG-TT-ATC-TG--TT----T-----T-------T--T
58758 TTCTGaAATCGATGaTTAatcaTTatctTcaTtcAGTaaTTTCtgTaaT. 58806
5861 TTCTGtAATCGATGtTTAgggtTTcaaaTttTcaAGTtcTTTCccTtgTt 5812
consensus TTCTG-AATCGATG-TTA----TT----T--T--AGT--TTTC--T--T-
58807 ..................................cGagagTtTCaaaatT 58822
5811 gtactcgatttgagtataactaatcggagattgatGgtttTcTCttcggT 5762
consensus -----------------------------------G----T-TC-----T
58823 TcaaAaTCGCtTTTAAGTTCTTTCTCTCG.TTCTCTCTTCgATTTGGGTA 58871
5761 TagtAtTCGCcTTTAAGTTCTTTCTCTCGtTTCTCTCTTCaATTTGGGTA 5712
consensus T---A-TCGC-TTTAAGTTCTTTCTCTCG-TTCTCTCTTC-ATTTGGGTA
58872 AAATTAAACAAAGATTTATATAATgCTCTTCATCGAATTAACTCT...GG 58918
5711 AAATTAAACAAAGATTTATATAATcCTCTTCATCGAATTAACTCTttaGG 5662
consensus AAATTAAACAAAGATTTATATAAT-CTCTTCATCGAATTAACTCT---GG
58919 cTTcCAAATTCTCAAAAATCGgTTTTCTTTTAAaATCTTtCGATCgTTTT 58968
5661 gTTtCAAATTCTCAAAAATCGcTTTTCTTTTAAgATCTTgCGATC.TTTT 5613
consensus -TT-CAAATTCTCAAAAATCG-TTTTCTTTTAA-ATCTT-CGATC-TTTT
58969 TTaTTTcGATTTACTCGATTTcACTTCaAATTAATtGAAgATTTGTGTTt 59018
5612 TTgTTTtGATTTACTCGATTTtACTTCcAATTAATcGAAtATTTGTGTT. 5564
consensus TT-TTT-GATTTACTCGATTT-ACTTC-AATTAAT-GAA-ATTTGTGTT-
59019 cTGATTCTTTGAATTAGGGTTcCAATtTCaGTtATCGTGAAaTTAATTTT 59068 T32N15
5563 .TGATTCTTTGAATTAGGGTTtCAATaTCtGTaATCGTGAAtTTAATTTT 5515 T10M13
consensus -TGATTCTTTGAATTAGGGTT-CAAT-TC-GT-ATCGTGAA-TTAATTTT
59069 GAGTACAGTTAAGaGATCAAAGACTTGTATATTcAtCTAACAacGtTTTT 59118
5514 GAGTACAGTTAAGcGATCAAAGACTTGTATATTtAcCTAACAttG.TTTT 5466
consensus GAGTACAGTTAAG-GATCAAAGACTTGTATATT-A-CTAACA--G-TTTT
59119 TTTCTTCTTATcGTTGCAGATCtaGTTCGTATAAGAAGACAGAGACTGGA 59168
5465 TTTCTTCTTATtGTTGCAGATCatGTTCGTATAAGAAGACAGAGACTGGA 5416
consensus TTTCTTCTTAT-GTTGCAGATC--GTTCGTATAAGAAGACAGAGACTGGA
59169 TTCTTCTCTCATcGATCACAaAGAG.TTTCTCGAtAATaCTTTCaCAACA 59217
5415 TTCTTCTCTCATTGATCACAGAGAGTTTTCTCGAGAATGCTTTCGCAACA 5366
consensus TTCTTCTCTCAT-GATCACA-AGAG-TTTCTCGA-AAT-CTTTC-CAACA
59218 GTCTACATACTCTTCAtGTAATTCTCTcAACTGTGGTTTttgt....... 59260
5365 GTCTACATACTCTTCAgGTAATTCTCTgAACTGTGGTTTccaatttgcta 5316
consensus GTCTACATACTCTTCA-GTAATTCTCT-AACTGTGGTTT-----------
59261 ...................CATGTGCTTCTCCTATGTTTGTATtaGATTG 59291
4666 ..(648 bp removed).CATGTGCTTCTCCTATGTTTGTATACGATTG 4636
consensus -------------------CATGTGCTTCTCCTATGTTTGTAT--GATTG
59292 GTTGATATAgtTAccAATGTTAGAAATCTTAtGTTAACAAGcTtCTaCtT 59341
4635 GTTGATATAagTAttAATGTTAGAAATCTTAaGTTAACAAGaTcCTgC.T 4587
consensus GTTGATATA--TA--AATGTTAGAAATCTTA-GTTAACAAG-T-CT-C-T
59342 TTgAATACCTGAGCAACTGATTCAgTGGAATcTATTTGACAATCACTCTc 59391
4586 TTaAATACCTGAGCAACTGATTCAaTGGAATtTATTTGACAATCACTCTt 4537
consensus TT-AATACCTGAGCAACTGATTCA-TGGAAT-TATTTGACAATCACTCT-
59392 CTTAGTGCAGGGTATAAA................................ 59409
4536 CTTAGTGCAGGGTATAAAaatgtcaacaaagatagaaacactatcataat 4487
consensus CTTAGTGCAGGGTATAAA--------------------------------
59410 ..................................gtGAAAAAGATACCTT 59425
4436 ...(71 bp removed)...tttagataatcgttaGAAAAAGATACCTT 4387
consensus ------------------------------------GAAAAAGATACCTT
59426 TTACTTGTTTAGTATTGTTAcGAACATTTAGAtGTGAGAATATGATTTTA 59475 T32N15
4386 TTACTTGTTTAGTATTGTTAtGAACATTTAGAcGTGAGAATATGATTTTA 4337 T10M13
consensus TTACTTGTTTAGTATTGTTA-GAACATTTAGA-GTGAGAATATGATTTTA
59476 TTGGTTGTTTTATGGACTATTATGTGGACcATGGTTTATgcTTTGAAGCT 59525
4336 TTGGTTGTTTTATGGACTATTATGTGGACtATGGTTTATaaTTTGAAGCT 4287
consensus TTGGTTGTTTTATGGACTATTATGTGGAC-ATGGTTTAT--TTTGAAGCT 4287
59526 .............................................ATGGC 59530
4286 atggcttaaatccgttggtcattctatggattattctttggagcgATGGC 4237
consensus ---------------------------------------------ATGGC
59531 TTGAATTTTGTTAGTtG.cGCATGATCTGTACTTACTTAAATcTGTGTAT 59579
4236 TTGAATTTTGTTAGTgGttGCATGATCTGTACTTACTTAAATaTGTGTAT 4187
consensus TTGAATTTTGTTAGT-G--GCATGATCTGTACTTACTTAAAT-TGTGTAT
59580 TGTaTGGTCTAATATGCTgACTTGAATATGTGCTTGTgtggtttatgGTG 59629
4186 TGTgTGGTCTAATATGCTaACTTGAATATGTGCTTGT..........GTG 4147
consensus TGT-TGGTCTAATATGCT-ACTTGAATATGTGCTTGT----------GTG
59630 GTTTATGCTTTGAAGTTaTGACTTcTTCGGTTGTTTGTTGTGTAGTATTT 59679
4146 GTTTATGCTTTGAAGTTgTGACTTtTTCGGTTGTTTGTTGTGTAGTATTT 4097
consensus GTTTATGCTTTGAAGTT-TGACTT-TTCGGTTGTTTGTTGTGTAGTATTT
59680 GcTTGCTTtgtTAcaTgGGTT...........TTTTCTTACCTTAATCTc 59718
4096 GtTTGCTTgaaTAtgTtGGTTgttacacggtgTTTTCTTACCTTAATCTt 4047
consensus G-TTGCTT---TA--T-GGTT-----------TTTTCTTACCTTAATCT-
59719 TGTGTTGAgTaGTTTAGTGCTAACTTGAATACCTTGTTTGTTTGTGTGGT 59768
4046 TGTGTTGAtTgGTTTAGTGCTAACTTGAATACCTTGTTTGTTTGAGTGGT 3997
consensus TGTGTTGA-T-GTTTAGTGCTAACTTGAATACCTTGTTTGTTTGAGTGGT
59769 tTATGTATTAATTaAAAAAATAtGaTATTACTAACTTTGAAATTTATGAT 59818
3996 cTATGTATTAATTcAAAAAATA.GcTATTACTAACaTTGAAATTTATGAT 3948
consensus -TATGTATTAATT-AAAAAATA-G-TATTACTAAC-TTGAAATTTATGAT
59819 GAACTCGAAAAGAGATGGTTATTGATTGTCCTTGGAAGATTATCTTACTT 59868
3947 GAACTCGAAAAGAGATGGTTATTGATTGTCCTTGGAAGATTATCTTACTT 3898
consensus GAACTCGAAAAGAGATGGTTATTGATTGTCCTTGGAAGATTATCTTACTT
59869 GATTTGTAATGATcGCTTAGTAGTGGTTtGATATGAGAtaTTTCTTTTGT 59918 T32N15
3897 GATTTGTAATGATtGCTTAGTAGTGGTTcGATATGAGAccTTTCTTTTGT 3848 T10M13
consensus GATTTGTAATGAT-GCTTAGTAGTGGTT-GATATGAGA--TTTCTTTTGT
59919 TATGAGTGTCTGAGAAGtGAGAAAAAATcTTTAGTGCTCAATTACAATTT 59968
3847 TATGAGTGTCTGAGAAGgGAGAAAAAATaTTTAGTGCTCAATTACAATTT 3798
consensus TATGAGTGTCTGAGAAG-GAGAAAAAAT-TTTAGTGCTCAATTACAATTT
59969 TCGTTGATCAACAATATtTCTaCAGATTACTATAAATTACaATTgTTCAT 60018
3797 TCGTTGATCAACAATATcTCTcCAGATTACTATAAATTACgATTaTTCAT 3748
consensus TCGTTGATCAACAATAT-TCT-CAGATTACTATAAATTAC-ATT-TTCAT
60019 GGATtTACATTTTAACAgGTacTATTTCATttTtaaatgatcatgcttta 60068
3747 GGATaTACATTTTAACAaGTtaTATTTCATcaT................. 3715
consensus GGAT-TACATTTTAACA-GT--TATTTCAT--T-----------------
60069 ttttgcccaattcCaGTCTTTCAAGTTTGATTGCTCtGaTAATTTcCTAA 60118
3714 .............CtGTCTTTCAAGTTTGATTGCTCcGtTAATTTaCTAA 3678
consensus -------------C-GTCTTTCAAGTTTGATTGCTC-G-TAATTT-CTAA
60119 TAGAAATCAgTAGTTTCTgGTTTTGTGTTGTGTTTCTTCGTGTgTGAAGC 60168
3677 TAGAAATCAtTAGTTTCTaGTTTTGTGTTGTGTTTCTTCGTGTcTGAAGC 3628
consensus TAGAAATCA-TAGTTTCT-GTTTTGTGTTGTGTTTCTTCGTGT-TGAAGC
60169 TAATTTTGTAACCGTGgcTGATACTAGTTCTCTgGTTTCTTGAAAGATTT 60218
3627 TAATTTTGTAACCGTGaaTGATACTAGTTCTCTtGTTTCTTGAAAGATTT 3578
consensus TAATTTTGTAACCGTG--TGATACTAGTTCTCT-GTTTCTTGAAAGATTT
60219 CAATTTCTTTGTT......AGTAAtTGTTTCCAGAGAAATTGTTT.AtTA 60261
3577 CAATTTCTTTGTTatgtaaAGTAAcTGTTTCCAGAGAAATTGTTTaAgTA 3528
consensus CAATTTCTTTGTT------AGTAA-TGTTTCCAGAGAAATTGTTT-A-TA
60262 TGAAATACTTGTTgGCAGGTTTTTAACCTTTGGGGTTAAAAAAACTGGTG 60311
3527 TGAAATACTTGTTaGCAGGTTTTTAACCTTTGGGGTTAAAAAAACTGGTG 3478
consensus TGAAATACTTGTT-GCAGGTTTTTAACCTTTGGGGTTAAAAAAACTGGTG
60312 AAAGACTCctgTCAATGTTTCCTCCAAAACATGAGCCTTgTGAaAatgAt 60361
3477 AAAGACTC..aTCAATGTTTCCTCCAAAACATGAGCCTT.TGAtAccaAa 3431
consensus AAAGACTC---TCAATGTTTCCTCCAAAACATGAGCCTT-TGA-A---A-
60362 TGGcAAaGA.. 60370 T32N15
3430 TGGtAAtGAtt 3420 T10M13
consensus TGG-AA-GA
written 10 Sep 97
updated 20 Sep 97
Larry Parnell