Gene T5J8.C
Putative Identification hypothetical protein
Position 47216 - 48568
Strand +
EST match F19981
Database match A. thaliana protein T6B20.12

 

CDS:  The table below lists the coordinates of the T5J8.C exons and which exon prediction algorithms selected the 5' and 3' termini (GS = GenScan, Gr = GRAIL, M = MZEF, NPG = NetPlantGene - selects splice sites only, not exons). Splice sites delineated by EST F19981 are designated by EST.

Exon Range 5' 3'
1 47216 - 47260 Gr NPG
2 47353 - 47634 Gr, M, NPG GS, Gr, M, NPG
3 47724 - 47945 GS, Gr, M, NPG EST, GS, M, NPG
4 48032 - 48196 EST, GS, Gr, M, NPG EST, GS, Gr, M, NPG
5 48281 - 48568 EST, GS, Gr, NPG GS

Complete CDS of T5J8.C

ATGGCTGCTTCTGTCGAAACTCCTTCACCTAATCATACGAACAACGAAGGAACACGCTTG
AACATGGTTTCTGCAACTTCTTTTGATTCTTCTTCTCCATCGGTTAGTCCATCTTCAGAC
AAACGTCTCTGGAGCAATGTACGTAACAGGGTTGATGTTCTTCTCGAAGAAAATAGCAAA
AATCACAAACCCGTTACCAATACGATTGCTATAGAATCAGAGAGATCAAAGAGATTTAAG
AATGATTCGATGCTTTTGCTTAAAGGGTTTGATTCTGTTTCTCATACTCTGTCTCTCCTT
TCTAGTAATCTCGACAATGCCCTTCAGGGAGTTAGAGAATTAGCTAAACCACCTTCATAT
TCTGAGATACTCCATTCGAATCTCAAAGCTGATCAGATTCAACGACAACAGAAAGAAGAA
GATGAAGAGGAAGAAGAGAGTAAAGGGAAGAAGAGGAAACACGAATCTGATGTTGAACAA
ACAGAAGATTCGTCTAATGAAGAAGAGAAGAGACCAAAAGAGAGGAAAATCATGAAGAAG
GCTAAGAACATTGCTATATCCATGGCAGCTAAGGCGAATTCGCTTGCAAGAGAGCTTAAA
ACTATAAAATCAGACCTGAGTTTTATCCAAGAACGTTGTGGGTTGCTTGAAGAAGAGAAC
AAGAGACTCAGAGATGGGTTTGTGAAAGGTGTTAGACCTGAAGAAGATGATTTGGTGAGG
CTACAACTGGAGGTGTTGCTTGCAGAGAAAGCTAGACTAGCGAATGAGAACGCGAATTTA
GTTAGGGAAAATCAGTGTCTTCATCAGATGGTTGAGTACCATCAGATTACATCTCAAGAT
CTATCTCCTTCATATGAACAAGTTGTTCAAGGTTTTTGCTTAGATTTCTCATCCCCTCTG
CCTCAATACGATGATGAAGAAGAAGAGCATGAAACAAGAGCTCGAGATGTCTCGAAAGCC
CTCAACGAAAGCTTTGAAAAAGCTGAAGAAGAACAATACTAA

 

Protein translation

MAASVETPSPNHTNNEGTRLNMVSATSFDSSSPSVSPSSDKRLWSNVRNRVDVLLEENSK
NHKPVTNTIAIESERSKRFKNDSMLLLKGFDSVSHTLSLLSSNLDNALQGVRELAKPPSY
SEILHSNLKADQIQRQQKEEDEEEEESKGKKRKHESDVEQTEDSSNEEEKRPKERKIMKK
AKNIAISMAAKANSLARELKTIKSDLSFIQERCGLLEEENKRLRDGFVKGVRPEEDDLVR
LQLEVLLAEKARLANENANLVRENQCLHQMVEYHQITSQDLSPSYEQVVQGFCLDFSSPL
PQYDDEEEEHETRARDVSKALNESFEKAEEEQY*

 

Alignment to T6B20.12

          1                                                         60
  T5J8.C  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 
T6B20.12  MNKVDEIEDFRFEDLEMETEKDKERMMTPTTRMSYSSSSSPSPSSASSSAASSLAAKAIR 

          61                                                       120
  T5J8.C  ~~~~~~~~~MAASVETPSPNHTNNEGTRLNMVSATSFDSSSPSVSPSSDKRLWSNVRNRV 
T6B20.12  ASSAHRDSSLSSAYSSPSSAPVPTPPKEVN....KAYEYTSMKSLNEPKRGFWGSLASKA 

          121                                                      180
  T5J8.C  DVLLEENSKNHKPVTNTIAIESERSKRFKNDSMLLLKGFDSVSHTLSLLSSNLDNALQGV 
T6B20.12  KAFLDEDDPNQLPQSPKRMEQSIPSATTSGTKEAGQTGRKSENPSLQRRLDAITSSL... 

          181                                                      240
  T5J8.C  RELAKPPSYSEILHSNLKADQIQRQQKEEDEEEEESKGKKRKHESDVEQTEDSSNEEEKR 
T6B20.12  .......NYIGGTIGTVVEEGITAVENRTAGIIQETRKKIKKKPS...LTRNQQNPEIQA 

          241                                                      300
  T5J8.C  PKERKIMKKAKNIAISMAAKANSLARELKTIKSDLSFIQERCGLLEEENKRLRDGFVKGV 
T6B20.12  DLEIQ.LKASRDVAMAMAAKAKLLLRELKMVKSDLAFAKQRCAQLEEENKVLRENRSGDS 

          301                                                      360
  T5J8.C  RPEEDDLVRLQLEVLLAEKARLANENANLVRENQCLHQMVEYHQITSQDL...SPSYEQV 
T6B20.12  QTDDDDLVRLQLETLLAEKARLAHENSIYTRENLYLRGVVEYHQLTMQDVVYFDEKTEEV 

          361                                        406
  T5J8.C  VQGFCLDFSSPLPQYDDEEEEHETRARDVSKALNESFEKAEEEQY*
T6B20.12  TEVYPINVSSMSSSSDNSYNPNPSFLELK*~~~~~~~~~~~~~~~~

 

written 16 Feb 98
Larry Parnell